Alternatives and similar repositories for ttfriends

Users that are interested in ttfriends are comparing it to the libraries listed below

• lonelyjoeparker / befi-bats-gui
  Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.
  ☆12Updated 8 years ago
• WallauBioinfo / ViralFlow
  Workflow for viral analysis guided by reference
  ☆14Updated last week
• jiqingxiaoxi / GLAPD
  design common and specific primer for LAMP using the whole genome
  ☆13Updated 6 years ago
• flu-crew / TreeSort
  Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.
  ☆18Updated 2 weeks ago
• hzaurzli / MicroWorldOmics
  ☆15Updated last week
• wclose / viralMetagenomicsPipeline
  Pipeline for metagenomic community analysis using DNA isolated from virus-like particles
  ☆13Updated 5 years ago
• 01life / ViromeFlowX
  ☆10Updated last week
• martin-steinegger / kraken-protocol
  Metagenome analysis using the Kraken software suite
  ☆35Updated 3 years ago
• stajichlab / biosample_metadata
  Extract metadata from biosamples in NCBI
  ☆16Updated 4 years ago
• Taming-the-BEAST / Introduction-to-BEAST2
  This is a simple introductory tutorial to help you get started with using BEAST2 and its accomplices.
  ☆10Updated 3 months ago
• spyros-lytras / dinuq
  The Dinucleotide Quantification Python Package
  ☆11Updated 3 years ago
• jonas-fuchs / SARS-CoV-2-analyses
  Collection of R scripts for SARS-CoV-2 (variant) analyses
  ☆12Updated 2 years ago
• nextstrain / zika-tutorial
  Data and scripts for Zika virus tutorial
  ☆10Updated this week
• nvelden / geneviewer
  An R package designed for drawing gene arrow maps
  ☆90Updated 2 weeks ago
• hildebra / lotus2
  Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.
  ☆53Updated 4 months ago
• sherrillmix / taxonomizr
  Parse NCBI taxonomy and accessions to find taxonomic assignments
  ☆77Updated 2 months ago
• sishuowang / Solutions_Manual_CME2006_MESA2014
  A solutions manual for all excercises in the Ziheng Yang's two seminall books on statistical molecular evolution: Computational Molecular…
  ☆18Updated last week
• victoriapascal / gutsmash
  gutSMASH
  ☆55Updated 2 weeks ago
• raeslab / omixer-rpm
  A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.
  ☆27Updated 6 years ago
• peterk87 / nf-flu
  Influenza genome analysis Nextflow workflow
  ☆28Updated last month
• biobakery / shortbred
  ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…
  ☆31Updated 8 months ago
• alvinxhan / PhyCLIP
  Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)
  ☆19Updated 4 years ago
• artic-network / primalscheme3
  Primalscheme3. Generation of highly multiplex primerschemes
  ☆18Updated last month
• alvinxhan / Phydelity
  Inference of putative transmission phylogenetic clusters
  ☆11Updated 5 years ago
• huangyh45 / PhyloAln
  PhyloAln: a convenient reference-based tool to align sequences and high-throughput reads for phylogeny and evolution in the omic era
  ☆17Updated 4 months ago
• matdoering / openPrimeR
  An R Package for Multiplex PCR Primer Design and Analysis
  ☆28Updated 3 months ago
• GenomicsAotearoa / metagenomics_summer_school
  Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber
  ☆65Updated last year
• ohmeta / metapi
  A general metagenomics data mining system focus on robust microbiome research
  ☆58Updated last year
• GreyGuoweiChen / VirBot
  VirBot: a protein-based RNA virus detector for metagenomic data
  ☆34Updated last year
• drostlab / orthologr
  Genome wide orthology inference and dNdS estimation
  ☆96Updated last month