A lightweight kmer-based algorithm for designing diagnostic CRISPR assays using genome data.
☆13Aug 19, 2024Updated 2 years ago
Alternatives and similar repositories for krisp
Users that are interested in krisp are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories☆14Mar 29, 2025Updated last year
- Non-redundant pangenome assemblies from multiple genomes or bins☆15Aug 6, 2026Updated 2 months ago
- Introduction to Nanopore Sequencing - Prac material and presentations from The Omics Australia Tutorials Sydney (TOAST) workshop 19th - 2…☆10Jan 12, 2019Updated 7 years ago
- A systematic/quantitative review of articles, which provides a basis for identifying what has been done so far in the field of plant path…☆23Aug 8, 2024Updated 2 years ago
- Advanced Vegan Workshop for ESA☆18Aug 7, 2017Updated 9 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆24Nov 16, 2023Updated 2 years ago
- QuantumDNA is an open-source Python package for simulating exciton and charge transfer in DNA using quantum mechanical methods. Designed …☆13Sep 23, 2026Updated last month
- ☆17Jul 3, 2018Updated 8 years ago
- ☆11May 14, 2025Updated last year
- taxonomy data from Wikipedia/Wikidata/Wikispecies☆22Feb 13, 2026Updated 8 months ago
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Jun 19, 2019Updated 7 years ago
- A wrapper library of DTLN noise reduction☆17Apr 26, 2026Updated 6 months ago
- repo for 2016 EDAMAME tutorials☆11Jul 20, 2016Updated 10 years ago
- Deep conditional autoregressive models for genome editing sequence-to-sequence problems☆10Jun 29, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆13Jul 23, 2020Updated 6 years ago
- A genome alignment and visualization system☆10Apr 30, 2024Updated 2 years ago
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆11Jan 21, 2022Updated 4 years ago
- 基于机器学习的发债主体违约风险预测☆21Mar 14, 2023Updated 3 years ago
- accessory functions for processing microbial community data☆12Dec 24, 2022Updated 3 years ago
- Strain/species identification in metagenomes using genome-specific markers☆10Aug 17, 2015Updated 11 years ago
- A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.☆22Nov 20, 2022Updated 3 years ago
- Hypervariable region primer-based extractor for 16S rRNA and other SSU/LSU sequences.☆10Jul 23, 2026Updated 3 months ago
- rOpenSci .github files☆11Jul 29, 2019Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆16May 30, 2021Updated 5 years ago
- An R package for extracting mutational signatures from vcf files☆11Feb 13, 2025Updated last year
- ☆12Feb 14, 2023Updated 3 years ago
- ☆14Apr 9, 2026Updated 6 months ago
- A CNN based model to predict the efficacy of Cas12a sgRNAs in diagnostic scenarios.☆12Feb 29, 2024Updated 2 years ago
- This is the official site for JASPER (Jellyfish based Assembly Sequence Polisher for Error Reduction)☆12Jun 27, 2024Updated 2 years ago
- ☆11Feb 17, 2023Updated 3 years ago
- TelomereSearch - identify telomeric repeats from genome assemblies☆12Jul 5, 2021Updated 5 years ago
- ☆15Dec 3, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Public releases of the msmJAX fast electrostatics code☆13Mar 26, 2026Updated 7 months ago
- ☆10Sep 4, 2024Updated 2 years ago
- ☆10Apr 17, 2021Updated 5 years ago
- ☆11May 10, 2025Updated last year
- An R package to call oomycete effectors☆11Aug 31, 2023Updated 3 years ago
- Browser-based tool for visualizing and analyzing germline copy number variants in genomic data☆12Nov 7, 2024Updated last year
- simulate meta-analysis data☆11Jul 13, 2019Updated 7 years ago