A lightweight kmer-based algorithm for designing diagnostic CRISPR assays using genome data.
☆13Aug 19, 2024Updated last year
Alternatives and similar repositories for krisp
Users that are interested in krisp are comparing it to the libraries listed below
Sorting:
- Introduction to Nanopore Sequencing - Prac material and presentations from The Omics Australia Tutorials Sydney (TOAST) workshop 19th - 2…☆10Jan 12, 2019Updated 7 years ago
- Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories☆14Mar 29, 2025Updated 11 months ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆15May 13, 2025Updated 9 months ago
- ☆16Aug 17, 2023Updated 2 years ago
- An R package with toolkits for tong's friends☆11Mar 18, 2025Updated 11 months ago
- ☆10May 14, 2025Updated 9 months ago
- Import script needed to build FluPRINT database from source☆11May 23, 2019Updated 6 years ago
- An interactive shiny app for processing DIA-nn output (filtering, MaxLFQ, Top3, iBAQ, etc.)☆14Feb 4, 2026Updated 3 weeks ago
- Flutrack platform gathers flu related tweets from the entire world, with searching tag, words that are influenza synonyms and flu symptom…☆13Apr 22, 2019Updated 6 years ago
- BioInformatics Agent (BIA): Unleashing the Power of Large Language Models to Reshape Bioinformatics Workflow☆42Aug 21, 2024Updated last year
- A package containing several useful R-functions for reading and plotting the results of Birth-Death Skyline (BDSKY) runs in BEAST2.☆12Nov 28, 2018Updated 7 years ago
- ☆13Dec 3, 2024Updated last year
- Lecture on viral phylodynamics☆11Oct 28, 2021Updated 4 years ago
- A CNN based model to predict the efficacy of Cas12a sgRNAs in diagnostic scenarios.☆12Feb 29, 2024Updated 2 years ago
- ☆56Feb 17, 2026Updated 2 weeks ago
- Implementation of "Interleaved Latent Visual Reasoning with Selective Perceptual Modeling".☆44Jan 21, 2026Updated last month
- Postprocessing gadgets for output generated by RevBayes☆14Feb 22, 2026Updated last week
- Alignment-free method to identify and analyse discriminant genomic subsequences within pathogen sequences☆10Feb 26, 2023Updated 3 years ago
- ☆14Oct 27, 2025Updated 4 months ago
- Functions for statistical estimation with pooled or grouped binary data☆10Jan 5, 2024Updated 2 years ago
- CHEMSMART: Chemistry Simulation and Modeling Automation Toolkit☆22Updated this week
- Inferring spatiotemporal dynamics of H5N1 influenza from sequence data☆10Sep 6, 2013Updated 12 years ago
- Tools for Adaptive Immune Receptor Sequence-Based Machine and Deep Learning☆12Feb 6, 2026Updated 3 weeks ago
- Phylogenetic pathway–dependent recognition of fixed substitutions and parallel mutations☆11Sep 18, 2025Updated 5 months ago
- Identification of viral RdRPs in single-cell RNA sequencing data☆13Jul 23, 2025Updated 7 months ago
- R is nowadays probably the most powerful tool for calculations of all kinds. There are plenty of modules available for work with molecula…☆11Feb 19, 2026Updated last week
- Browser-based tool for visualizing and analyzing germline copy number variants in genomic data☆10Nov 7, 2024Updated last year
- Implementation of gene-level rare coding variant association tests targeting allelic series: cases where increasingly deleterious mutatio…☆14Oct 22, 2025Updated 4 months ago
- A script to re-color a FigTree saved Nexus file☆13Jan 29, 2017Updated 9 years ago
- Datamonkey - Run state-of-the-art statistical models through the comfort of your browser☆10Feb 23, 2026Updated last week
- p-IgGen: A Generative Paired Antibody Language Model☆13May 6, 2025Updated 9 months ago
- Population Genomics in R workshop☆12Mar 24, 2024Updated last year
- Xiangyun's personal website☆11Feb 10, 2026Updated 3 weeks ago
- Python tools for working with LAMMPS files☆15Jan 5, 2026Updated last month
- GPU-enabled docker container with Jupyterlab for artificial intelligence☆10Aug 11, 2023Updated 2 years ago
- The Dinucleotide Quantification Python Package☆11Mar 12, 2022Updated 3 years ago
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆10Jan 21, 2022Updated 4 years ago
- coevol -- Correlated evolution of substitution rates and quantitative traits☆13Oct 18, 2024Updated last year
- Data and scripts for Zika virus tutorial☆10Oct 14, 2025Updated 4 months ago