Alternatives and similar repositories for krisp

Users that are interested in krisp are comparing it to the libraries listed below

• peterk87 / nf-flu
  Influenza genome analysis Nextflow workflow
  ☆30Updated last month
• wclose / viralMetagenomicsPipeline
  Pipeline for metagenomic community analysis using DNA isolated from virus-like particles
  ☆13Updated 5 years ago
• evolbioinfo / booster
  ☆27Updated 5 years ago
• JustineCharon / RdRp-scan
  Exploring the "dusk matter" of the RNA virosphere
  ☆35Updated 3 years ago
• ToniWestbrook / paladin
  Protein Alignment and Detection Interface
  ☆60Updated last year
• happykhan / BRIG
  BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…
  ☆37Updated 6 years ago
• cjneely10 / MetaSanity
  Pipeline for major biological analyses.
  ☆35Updated 3 years ago
• nvelden / geneviewer
  An R package designed for drawing gene arrow maps
  ☆91Updated last month
• martin-steinegger / kraken-protocol
  Metagenome analysis using the Kraken software suite
  ☆35Updated 3 years ago
• takaram / kofam_scan
  CLI tool to annotate genes with KOfam
  ☆85Updated 2 years ago
• fmenardo / Treemmer
  Python tool to reduce size and redundancy of phylogenetic datasets
  ☆46Updated 2 years ago
• JLSteenwyk / orthohmm
  Improved Inference of Ortholog Groups using Hidden Markov Models
  ☆37Updated last month
• salzberg-lab / Balrog
  Bacterial Annotation by Learned Representation of Genes
  ☆58Updated 4 years ago
• jonas-fuchs / BAMdash
  create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks
  ☆54Updated 2 months ago
• Stephane-S / Simplot_PlusPlus
  ☆39Updated 2 years ago
• refresh-bio / vclust
  Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes
  ☆92Updated 5 months ago
• GreyGuoweiChen / VirBot
  VirBot: a protein-based RNA virus detector for metagenomic data
  ☆34Updated last year
• zreitz / multismash
  A workflow and scripts for large-scale antiSMASH analyses
  ☆45Updated 7 months ago
• sjspielman / phyphy
  Python HyPhy: Facilitating HyPhy execution and parsing
  ☆21Updated 3 years ago
• balabanmetin / uDance
  ☆42Updated last year
• pereiramemo / BiG-MEx
  BiG-MEx implementation as Docker images and R packages
  ☆13Updated 3 years ago
• donia-lab / MetaBGC
  A metagenomic strategy for harnessing the chemical repertoire of the human microbiome
  ☆33Updated this week
• OrthoFinder / OrthoFinder
  Phylogenetic orthology inference for comparative genomics
  ☆70Updated this week
• kelwyres / Bactabolize
  ☆41Updated 4 months ago
• zellerlab / GECCO
  GEne Cluster prediction with COnditional random fields.
  ☆73Updated 3 weeks ago
• NBChub / bgcflow
  Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)
  ☆49Updated 10 months ago
• liaoherui / StrainScan
  High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers
  ☆43Updated last year
• flu-crew / TreeSort
  Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.
  ☆19Updated last month
• nselem / corason
  Bioinformatic Tools for study Evolution of metabolic diversity
  ☆35Updated last year
• steineggerlab / unicore
  Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5
  ☆77Updated 4 months ago