Alternatives and similar repositories for scButterfly

Users that are interested in scButterfly are comparing it to the libraries listed below

• QuKunLab / MultiomeBenchmarking
  ☆51Updated 10 months ago
• yuanzhiyuan / SODB_analysis
  ☆12Updated 2 years ago
• melobio / Concerto-reproducibility
  ☆40Updated 3 years ago
• jiang-q19 / scPRAM
  scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism
  ☆18Updated last year
• huidongchen / simba
  SIMBA: SIngle-cell eMBedding Along with features
  ☆20Updated this week
• suinleelab / contrastiveVI
  ☆60Updated last year
• lcrawlab / recall
  Calibrated clustering with artificial variables to avoid over-clustering in single-cell RNA-sequencing
  ☆16Updated last month
• theislab / scTab
  ☆61Updated last year
• vandijklab / CINEMA-OT
  ☆34Updated 8 months ago
• czi-ai / scGenePT
  ☆28Updated 11 months ago
• PYangLab / Matilda
  Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…
  ☆22Updated 7 months ago
• kaizhang / single-cell-benchmark
  ☆11Updated 2 years ago
• Roy-lab / scMTNI
  ☆30Updated 5 months ago
• SabbaghCodes / ImbalancedLearningForSingleCellFoundationModels
  Code for the benchmarking single-cell foundation models (scGPT, scBERT, and Geneformer) for cell-type annotation task using skewed single…
  ☆16Updated last year
• jlakkis / sciPENN
  ☆18Updated 3 years ago
• bm2-lab / STAMP
  ☆16Updated 7 months ago
• datapplab / AutoClass
  ☆43Updated 3 years ago
• mcgilldinglab / scCross
  A Deep Learning-Based Model for the integration, cross-dataset cross-modality generation, self augmentation and matched multi-omics simul…
  ☆15Updated 5 months ago
• YangLabHKUST / Portal
  Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets
  ☆32Updated 2 years ago
• XLearning-SCU / MetaQ
  Code for the paper "MetaQ: fast, scalable and accurate metacell inference via deep single-cell quantization"
  ☆21Updated last year
• cole-trapnell-lab / sci-plex
  repository containing analysis scripts and auxiliary files
  ☆36Updated 5 years ago
• cliffren / PENCIL
  PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.
  ☆28Updated last year
• lulab / Pathformer
  Pathformer: biological pathway informed transformer model
  ☆34Updated 2 years ago
• Center-for-Health-Data-Science / multiDGD
  ☆26Updated 7 months ago
• liu-bioinfo-lab / EPCOT
  ☆25Updated 2 years ago
• yutongo / TIGON
  ☆49Updated 9 months ago
• shmohammadi86 / SCINET
  ☆19Updated 4 years ago
• Genentech / pascient
  ☆17Updated 8 months ago
• doraadong / UNIFAN
  Unsupervised cell functional annotation for single-cell RNA-Seq
  ☆22Updated 2 years ago
• OSU-BMBL / scDEAL
  Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data
  ☆58Updated last year