Alternatives and similar repositories for progressiveCactus:

Users that are interested in progressiveCactus are comparing it to the libraries listed below

• rrwick / Minipolish
  A tool for Racon polishing of miniasm assemblies
  ☆74Updated 4 years ago
• medvedevgroup / SibeliaZ
  A fast whole-genome aligner based on de Bruijn graphs
  ☆146Updated 2 months ago
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆97Updated last year
• JustinChu / JupiterPlot
  A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.
  ☆79Updated 4 months ago
• nanoporetech / ont-assembly-polish
  ONT assembly and Illumina polishing pipeline
  ☆91Updated 4 years ago
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆97Updated last year
• sujaikumar / assemblage
  Tools for working with second gen assemblies, fasta sequences, etc
  ☆93Updated 8 years ago
• dentearl / mafTools
  Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.
  ☆106Updated 2 years ago
• nanoporetech / qcat
  qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.
  ☆79Updated 4 years ago
• paoloshasta / shasta
  De novo assembly from Oxford Nanopore reads.
  ☆82Updated last week
• rjchallis / assembly-stats
  Assembly statistic visualisation
  ☆89Updated last year
• BioInf-Wuerzburg / proovread
  PacBio hybrid error correction through iterative short read consensus
  ☆61Updated 5 years ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆114Updated this week
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆110Updated this week
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆147Updated 3 years ago
• mroosmalen / nanosv
  SV caller for nanopore data
  ☆91Updated 4 years ago
• LomanLab / mockcommunity
  Long-read mock community experiments
  ☆105Updated 3 years ago
• adigenova / wengan
  An accurate and ultra-fast hybrid genome assembler
  ☆83Updated last year
• malonge / RaGOO
  RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
  ☆173Updated 3 years ago
• MikkelSchubert / paleomix
  Pipelines and tools for the processing of ancient and modern HTS data.
  ☆47Updated 2 weeks ago
• rhysf / Synima
  Synteny Imager
  ☆61Updated 7 months ago
• tbenavi1 / genomescope2.0
  Reference-free profiling of polyploid genomes
  ☆115Updated 9 months ago
• mahulchak / quickmerge
  A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.
  ☆205Updated 2 years ago
• xiaochuanle / MECAT2
  ☆71Updated 4 years ago
• eldariont / svim-asm
  Structural Variant Identification Method using Genome Assemblies
  ☆108Updated 2 years ago
• daewoooo / SVbyEye
  ☆86Updated last month
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆100Updated 2 months ago
• marbl / SALSA
  SALSA: A tool to scaffold long read assemblies with Hi-C data
  ☆184Updated 10 months ago
• almiheenko / AGB
  Interactive visualization of assembly graphs
  ☆81Updated 3 years ago
• NAL-i5K / GFF3toolkit
  Python programs for processing GFF3 files
  ☆95Updated last year