glennhickey / progressiveCactusLinks
Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules
☆86Updated 7 years ago
Alternatives and similar repositories for progressiveCactus
Users that are interested in progressiveCactus are comparing it to the libraries listed below
Sorting:
- Assembly statistic visualisation☆90Updated last year
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- ONT assembly and Illumina polishing pipeline☆89Updated 4 years ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆109Updated 3 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
- A fork of exonerate: a generic tool for sequence alignment☆70Updated last year
- De novo genome assembly and multisample variant calling☆112Updated 6 years ago
- Automatically optimise three of Velvet's assembly parameters.☆48Updated 2 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆117Updated 5 months ago
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆85Updated 9 months ago
- A collection of scripts for processing fastq files in ways to improve de novo transcriptome assemblies, and for evaluating those assembli…☆50Updated last year
- Software for clustering de novo assembled transcripts and counting overlapping reads☆73Updated 3 years ago
- PHAST☆75Updated this week
- PacBio hybrid error correction through iterative short read consensus☆60Updated 6 years ago
- Dotplot large Genomes in an Interactive, Efficient and Simple way☆108Updated this week
- A list of software for pangenomics☆128Updated 2 weeks ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated last month
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆40Updated 5 years ago
- LoFreq Star: Sensitive variant calling from sequencing data☆107Updated 3 years ago
- SV caller for nanopore data☆92Updated 5 years ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Updated 4 years ago
- Tools and software library developed by the ONT Applications group☆63Updated 4 years ago
- 🌈Scaffold genome sequence assemblies using linked or long read sequencing data☆95Updated 10 months ago
- Estimating k-mer coverage histogram of genomics data☆76Updated last year
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 10 months ago
- High-performance error correction for Illumina resequencing data☆73Updated 9 years ago
- Structural Variant Index☆75Updated 9 months ago
- ☆44Updated 8 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 4 years ago