glennhickey / progressiveCactusLinks
Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules
☆88Updated 7 years ago
Alternatives and similar repositories for progressiveCactus
Users that are interested in progressiveCactus are comparing it to the libraries listed below
Sorting:
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆109Updated 3 years ago
- ONT assembly and Illumina polishing pipeline☆89Updated 5 years ago
- Assembly statistic visualisation☆90Updated last year
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆120Updated 2 months ago
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆86Updated last year
- A tool for Racon polishing of miniasm assemblies☆78Updated 3 months ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated 3 weeks ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Updated 4 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆76Updated 3 years ago
- PacBio hybrid error correction through iterative short read consensus☆60Updated 6 years ago
- SV caller for nanopore data☆92Updated 5 years ago
- A fork of exonerate: a generic tool for sequence alignment☆70Updated 2 years ago
- De novo genome assembly and multisample variant calling☆112Updated 6 years ago
- ☆68Updated last month
- PHAST☆77Updated this week
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated last year
- Pipeline to convert a haploid assembly into diploid☆108Updated 10 months ago
- A list of software for pangenomics☆162Updated this week
- Hybrid error correction of long reads using colored de Bruijn graphs☆106Updated 3 months ago
- Simple pileup-based variant caller☆94Updated 7 months ago
- LoFreq Star: Sensitive variant calling from sequencing data☆108Updated last month
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- Toolkit for calling structural variants using short or long reads☆113Updated 2 months ago
- Synteny Imager☆65Updated last month
- ☆80Updated 5 years ago
- ☆45Updated 8 years ago
- Dotplot large Genomes in an Interactive, Efficient and Simple way☆108Updated this week
- Automatically optimise three of Velvet's assembly parameters.☆48Updated 3 years ago