glennhickey / progressiveCactusLinks
Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules
☆85Updated 7 years ago
Alternatives and similar repositories for progressiveCactus
Users that are interested in progressiveCactus are comparing it to the libraries listed below
Sorting:
- Assembly statistic visualisation☆90Updated last year
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- ONT assembly and Illumina polishing pipeline☆89Updated 4 years ago
- Tools and software library developed by the ONT Applications group☆63Updated 4 years ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated 2 weeks ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- Automatically optimise three of Velvet's assembly parameters.☆47Updated 2 years ago
- PHAST☆74Updated this week
- Structural Variant Index☆75Updated 7 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆118Updated 3 months ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆72Updated 3 years ago
- De novo genome assembly and multisample variant calling☆112Updated 6 years ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆109Updated 3 years ago
- SV caller for nanopore data☆91Updated 5 years ago
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆82Updated 8 months ago
- UCSC Nanopore☆43Updated 5 years ago
- A fork of exonerate: a generic tool for sequence alignment☆69Updated last year
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- Experimental pipeline for correcting nanopore reads☆39Updated 8 years ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- High-performance error correction for Illumina resequencing data☆72Updated 9 years ago
- H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)☆72Updated 4 years ago
- A list of software for pangenomics☆121Updated last week
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 8 months ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆88Updated 4 years ago
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆45Updated 5 years ago
- ☆78Updated 4 years ago
- A tool for Racon polishing of miniasm assemblies☆77Updated 2 months ago
- LoFreq Star: Sensitive variant calling from sequencing data☆105Updated 3 years ago
- Genome inference from a population reference graph☆97Updated 4 months ago