genome / breakdancer
SV detection from paired end reads mapping
☆114Updated 5 years ago
Related projects ⓘ
Alternatives and complementary repositories for breakdancer
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆154Updated last year
- Whole Genome Simulator for Next-Generation Sequencing☆94Updated last year
- VarDict☆188Updated 10 months ago
- The DevNet project on github stores the PacBio DevNet website.☆115Updated 6 years ago
- Relevant papers for CNV and SV approaches☆94Updated 2 weeks ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆153Updated 3 months ago
- a lightweight bam file depth statistical tool☆147Updated 2 months ago
- Script to automatically create and run IGV snapshot batchscripts☆137Updated last year
- ABRA2☆91Updated last year
- Tools for processing and analyzing structural variants.☆150Updated 2 years ago
- ☆81Updated 5 years ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆94Updated 6 months ago
- Workflows for germline short variant discovery with GATK4☆133Updated 3 years ago
- A tool for profiling long STRs from short reads☆88Updated 3 years ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆128Updated last year
- Bayesian genotyper for structural variants☆126Updated 3 years ago
- A structural variation pipeline for short-read sequencing☆172Updated this week
- pbsv - PacBio structural variant (SV) calling and analysis tools☆130Updated 3 weeks ago
- ☆105Updated this week
- WisecondorX — An evolved WISECONDOR☆94Updated 2 months ago
- Annotation and Ranking of Structural Variation☆221Updated 2 months ago
- Finder of Somatic Fusion Genes in RNA-seq data☆142Updated last year
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆205Updated 4 months ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆107Updated last year
- Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…☆75Updated 2 years ago
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆76Updated 4 years ago
- FEELnc : FlExible Extraction of LncRNA☆82Updated 2 months ago
- A minimap2 frontend for PacBio native data formats☆176Updated 3 weeks ago
- SV caller for nanopore data☆91Updated 4 years ago