jstjohn / SeqPrepLinks
Tool for stripping adaptors and/or merging paired reads with overlap into single reads.
☆145Updated 9 years ago
Alternatives and similar repositories for SeqPrep
Users that are interested in SeqPrep are comparing it to the libraries listed below
Sorting:
- ☆123Updated 3 months ago
- The DevNet project on github stores the PacBio DevNet website.☆116Updated 7 years ago
- Whole Genome Simulator for Next-Generation Sequencing☆101Updated 11 months ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆76Updated 3 years ago
- Match up paired end fastq files quickly and efficiently.☆152Updated last year
- An efficient FASTQ manipulation suite☆138Updated 5 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- AdapterRemoval v2 - rapid adapter trimming, identification, and read merging☆113Updated this week
- UCSC Nanopore group's software pipeline for reference-based sequence analysis☆55Updated 10 years ago
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆146Updated 4 months ago
- Automatically exported from code.google.com/p/ea-utils☆96Updated 2 years ago
- BAM Statistics, Feature Counting and Annotation☆151Updated 3 weeks ago
- NEAT read simulation tools☆101Updated 3 years ago
- ABRA2☆95Updated 2 years ago
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆194Updated 2 weeks ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆142Updated 3 months ago
- PacBio Assembly Tool Suite: Reads in ⇨ Assembly out☆118Updated 5 years ago
- a signal-level demultiplexer for Oxford Nanopore reads☆126Updated 4 years ago
- VCF-kit: Assorted utilities for the variant call format☆131Updated 4 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 5 years ago
- FEELnc : FlExible Extraction of LncRNA☆90Updated 3 months ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆83Updated 3 years ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆165Updated 2 years ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆110Updated 4 months ago
- Hierarchical Alignment Format☆173Updated 2 months ago
- SV detection from paired end reads mapping☆117Updated 6 years ago
- Python programs for processing GFF3 files☆101Updated last year
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 4 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago