Tool for stripping adaptors and/or merging paired reads with overlap into single reads.
☆146Oct 4, 2016Updated 9 years ago
Alternatives and similar repositories for SeqPrep
Users that are interested in SeqPrep are comparing it to the libraries listed below
Sorting:
- Error correction and variant calling algorithm for nanopore sequencing☆26Apr 23, 2016Updated 9 years ago
- Windowed Adaptive Trimming for fastq files using quality☆227May 8, 2017Updated 8 years ago
- Tools for next-generation sequencing analysis☆89Jun 25, 2019Updated 6 years ago
- PAired-eND Assembler for DNA sequences☆138Dec 21, 2020Updated 5 years ago
- ☆96Sep 21, 2022Updated 3 years ago
- Small utilities for working with fastq sequence files.☆123Oct 4, 2022Updated 3 years ago
- Rapid sensitive and accurate read mapping via quasi-mapping☆90Jun 5, 2020Updated 5 years ago
- Create Bloom filters for a given reference and then use it to categorize sequences☆76Nov 26, 2024Updated last year
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆182Jul 30, 2019Updated 6 years ago
- AdapterRemoval v2 - rapid adapter trimming, identification, and read merging☆115Feb 24, 2026Updated last week
- ☆131Jul 9, 2023Updated 2 years ago
- a tool for processing .bed and .vcf files☆21Apr 25, 2017Updated 8 years ago
- A program for summarising CpG methylation patterns☆20Sep 9, 2016Updated 9 years ago
- Rcount: simple and flexible RNA-Seq read counting☆12May 19, 2022Updated 3 years ago
- Haplotype-based somatic genome simulator☆10May 19, 2017Updated 8 years ago
- de novo sequence assembler using string graphs☆243Aug 8, 2019Updated 6 years ago
- Gordon's Text utils Library☆10Apr 11, 2022Updated 3 years ago
- Targeted Amplicon Bisulfite Sequencing Analysis Tool☆11May 8, 2019Updated 6 years ago
- ☆12Jan 21, 2016Updated 10 years ago
- Next generation sequencing reads de novo assembler.☆238Sep 20, 2025Updated 5 months ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Oct 30, 2023Updated 2 years ago
- flexible barcode and adapter removal☆80Feb 10, 2023Updated 3 years ago
- A 3'-end adapter contaminant trimmer☆95Jan 23, 2018Updated 8 years ago
- deSAMBA: fast and accurate classification of metagenomics long reads with sparse approximate matches☆12May 5, 2024Updated last year
- Tools for early stage alignment file processing☆95Mar 12, 2019Updated 6 years ago
- A metagenomic and isolate assembly and analysis pipeline built with AMOS☆93Nov 20, 2017Updated 8 years ago
- Tools for bam file processing☆55Apr 20, 2015Updated 10 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Oct 22, 2019Updated 6 years ago
- Squeakr: An Exact and Approximate k -mer Counting System☆86Feb 23, 2025Updated last year
- Gene Set Enrichment Analysis (GSEA) is a computational method that determines whether an a priori defined set of genes shows statisticall…☆38Mar 10, 2025Updated 11 months ago
- RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.☆14Nov 10, 2025Updated 3 months ago
- ☆16Feb 5, 2026Updated 3 weeks ago
- Adaptive haplotype assembly for efficiently leveraging high coverage in long reads☆13Sep 4, 2018Updated 7 years ago
- WALT is a read mapping program for bisulfite sequencing DNA methylation studies.☆17Aug 23, 2022Updated 3 years ago
- Peakzilla is a self-learning algorithm to identify transcription factor binding sites from ChIP-seq data. I would be very happy if you tr…☆21Aug 18, 2025Updated 6 months ago
- Repository of our application for human-augmented binning☆27Apr 26, 2021Updated 4 years ago
- ☆22Jun 9, 2021Updated 4 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Jan 19, 2021Updated 5 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Aug 4, 2021Updated 4 years ago