TRON-Bioinformatics / tronflow-alignmentLinks
Nextflow pipeline for BWA, BWA2 and STAR alignments
☆12Updated last year
Alternatives and similar repositories for tronflow-alignment
Users that are interested in tronflow-alignment are comparing it to the libraries listed below
Sorting:
- ☆27Updated 3 years ago
- ☆24Updated last year
- ☆14Updated 2 years ago
- Micro DNA identification☆23Updated 4 years ago
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆27Updated 2 years ago
- ☆23Updated 5 months ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Updated 3 years ago
- FINSURF is a tool designed to analyse lists of sequences variants in the human genome.☆12Updated 3 years ago
- ☆18Updated last year
- Readme☆10Updated 5 years ago
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆17Updated 2 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆23Updated last year
- ☆20Updated this week
- ☆20Updated 3 years ago
- ☆23Updated 4 years ago
- a bucket of bioinformatics scripts☆13Updated 3 weeks ago
- This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions …☆18Updated 2 years ago
- ☆23Updated 10 months ago
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆17Updated 5 months ago
- Enabling differential allele-specific analysis☆11Updated last year
- ☆37Updated 6 years ago
- ☆34Updated last month
- The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVOR…☆34Updated last year
- A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…☆20Updated 8 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆32Updated 2 years ago
- ☆38Updated 2 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated last year
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Updated this week
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 9 months ago
- A tool to plot significant regions of GWAS☆29Updated 2 years ago