gersteinlab / starrpeaker
STARRPeaker: STARR-seq peak caller
☆14Updated 2 years ago
Related projects: ⓘ
- tools to find circRNAs in RNA-seq data☆40Updated 6 years ago
- ATAC-seq processing pipeline☆31Updated 2 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆26Updated 5 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆34Updated 2 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆64Updated 5 years ago
- Tutorial Website☆51Updated 3 years ago
- DCC/DAC methylation pipeline source☆54Updated 4 years ago
- ☆29Updated 6 years ago
- A set of pipelines for Hi-C and ChIP-Seq analysis.☆43Updated 5 months ago
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆61Updated 8 months ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆43Updated last year
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆33Updated last year
- Package for analysis and characterization of differential TADs☆22Updated 2 years ago
- A Perl/R pipeline for plotting metagenes☆34Updated 3 years ago
- ☆35Updated last year
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆23Updated 3 weeks ago
- Allele-specific alignment sorting☆52Updated last year
- code associated with crane-nature-2015, 10.1038/nature14450☆34Updated 9 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆49Updated last year
- ENCODE long read RNA-seq pipeline☆44Updated last year
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆23Updated 5 years ago
- scripts for analyzing the CVDC data.☆17Updated 4 years ago
- Unofficial repo for software vendoring or packaging purposes☆19Updated 6 years ago
- CN-Learn☆29Updated 4 years ago
- HMMRATAC peak caller for ATAC-seq data☆98Updated 2 years ago
- Pipeline for Somatic Variant Calling with WES and WGS data☆20Updated 4 months ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆42Updated 7 years ago
- Arabidopsis RNA_-seq downstream analysis shiny app☆31Updated 5 years ago
- ☆51Updated 5 years ago
- Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis☆21Updated last year