STARRPeaker: STARR-seq peak caller
☆17Jul 6, 2022Updated 3 years ago
Alternatives and similar repositories for starrpeaker
Users that are interested in starrpeaker are comparing it to the libraries listed below
Sorting:
- ☆12Mar 17, 2023Updated 2 years ago
- ☆12Apr 9, 2018Updated 7 years ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆35Jan 6, 2025Updated last year
- ☆17Nov 9, 2020Updated 5 years ago
- SIP: Significant Interaction Peak caller☆15Apr 24, 2025Updated 10 months ago
- Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment☆18Jun 3, 2021Updated 4 years ago
- Prediction of Active Enhancers and Promoters in a Cell type specific manner using shape matching of histone and/or DNase-I hypersensitivi…☆19Sep 19, 2018Updated 7 years ago
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆24Sep 28, 2022Updated 3 years ago
- Atac-seq QC matrix☆22Jun 4, 2024Updated last year
- Tidy Tools for Visualizing Mixture Models☆23Jan 6, 2025Updated last year
- Software for comparing contact maps from HiC, CaptureC and other 3D genome data.☆26May 21, 2018Updated 7 years ago
- Code for finding putative enhancers using Hi-C data☆28Feb 27, 2018Updated 8 years ago
- multiway chromatin interaction, 3D genome, single-nucleus, hypergraph representation learning☆31Jul 20, 2022Updated 3 years ago
- Statistically Significant loops from HiChIP data☆46Apr 17, 2024Updated last year
- Analysis pipeline for processing paired-end Illumina reads obtained after ancient mtDNA target enrichment capture.☆11Mar 27, 2020Updated 5 years ago
- ATAC-seq processing pipeline☆34Apr 8, 2022Updated 3 years ago
- Repository containing the scripts regarding analyses in Zufferey & Tavernari et al.☆10Feb 22, 2021Updated 5 years ago
- Importing and manipulating Hi-C data in R☆11Jul 17, 2025Updated 7 months ago
- Python script for calling SNPs, MNPs, and indels in mitochondrial DNA.☆10Apr 19, 2016Updated 9 years ago
- RaMWAS: Fast Methylome-Wide Association Study Pipeline for Enrichment Platforms☆10Sep 22, 2021Updated 4 years ago
- ☆84Feb 3, 2021Updated 5 years ago
- ☆11Oct 28, 2025Updated 4 months ago
- Optimizing Cancer Mutation Signatures Jointly with Sampling Likelihood☆10Aug 22, 2022Updated 3 years ago
- HiC-Reg is a tool to predict Hi-C contact counts from one-dimensional regulatory signals☆11Aug 25, 2020Updated 5 years ago
- Code used for mouse single cell RNAseq testis atlas☆12Nov 28, 2020Updated 5 years ago
- FinalVersions☆17Apr 3, 2017Updated 8 years ago
- Computational Framework to reconstructing tumor clone structures☆15Mar 31, 2021Updated 4 years ago
- Tools for processing HIC data.☆11May 21, 2021Updated 4 years ago
- CircRNA testing and ploting R package☆10Nov 23, 2020Updated 5 years ago
- ☆11Jun 26, 2020Updated 5 years ago
- Repo for a Microbiome Protocol☆10Apr 26, 2018Updated 7 years ago
- Video Summarization Transformer: Implementation in PyTorch of the Transformer model for video summarisation☆10Oct 27, 2020Updated 5 years ago
- 在云端存储学习的过程产生的代码☆11Nov 30, 2020Updated 5 years ago
- scripts used for processing and analyzing data in the article.☆13Oct 31, 2019Updated 6 years ago
- ☆10May 23, 2019Updated 6 years ago
- scripts used to analyse horizontal transfer and evolution of transposable elements in 307 vertebrate species☆11May 16, 2021Updated 4 years ago
- A modular, containerized pipeline for PRO-seq data processing☆11Updated this week
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- Code accompanying the paper "Deciphering regulatory DNA sequences and noncoding genetic variants using neural network models of massively…☆12Aug 26, 2021Updated 4 years ago