STARRPeaker: STARR-seq peak caller
☆17Jul 6, 2022Updated 3 years ago
Alternatives and similar repositories for starrpeaker
Users that are interested in starrpeaker are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Mar 17, 2023Updated 3 years ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆36Jan 6, 2025Updated last year
- Prediction of Active Enhancers and Promoters in a Cell type specific manner using shape matching of histone and/or DNase-I hypersensitivi…☆19Sep 19, 2018Updated 7 years ago
- ☆12Apr 9, 2018Updated 8 years ago
- SIP: Significant Interaction Peak caller☆17Apr 24, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆18Nov 9, 2020Updated 5 years ago
- Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment☆18Jun 3, 2021Updated 4 years ago
- Atac-seq QC matrix☆22Jun 4, 2024Updated last year
- RaMWAS: Fast Methylome-Wide Association Study Pipeline for Enrichment Platforms☆10Sep 22, 2021Updated 4 years ago
- Repo for a Microbiome Protocol☆10Apr 26, 2018Updated 8 years ago
- multiway chromatin interaction, 3D genome, single-nucleus, hypergraph representation learning☆31Jul 20, 2022Updated 3 years ago
- ☆11Jun 26, 2020Updated 5 years ago
- Public data resources and Bioconductor: The goal of this workshop is to introduce Bioconductor packages for finding, accessing, and using…☆15May 12, 2025Updated last year
- Bioinformatic Tools for analyzing targeted amplicon sequencing developed by Nicholas Hathaway of Bailey Lab☆17Apr 9, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Statistically Significant loops from HiChIP data☆46Apr 17, 2024Updated 2 years ago
- ☆12Aug 31, 2017Updated 8 years ago
- Tools for processing HIC data.☆11May 21, 2021Updated 5 years ago
- FinalVersions☆17Apr 3, 2017Updated 9 years ago
- Software for comparing contact maps from HiC, CaptureC and other 3D genome data.☆26May 21, 2018Updated 8 years ago
- Repository containing the scripts regarding analyses in Zufferey & Tavernari et al.☆10Feb 22, 2021Updated 5 years ago
- Code accompanying the paper "Deciphering regulatory DNA sequences and noncoding genetic variants using neural network models of massively…☆12May 9, 2026Updated last week
- This computational method has been published in BMC genomics as: "Identifying branch-specific positive selection throughout the regulato…☆17Apr 30, 2026Updated 3 weeks ago
- Detect recombination hotspots using population genetic data.☆17Jun 10, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆14Jul 1, 2025Updated 10 months ago
- Tidy Tools for Visualizing Mixture Models☆23Jan 6, 2025Updated last year
- scripts used for processing and analyzing data in the article.☆13Oct 31, 2019Updated 6 years ago
- Scripts for processing sci-RNA-seq/sci-ATAC-seq/sci-CAR reads processing☆15Dec 12, 2018Updated 7 years ago
- Reference Genome Independent Differential DNA Methylation Analysis☆11Aug 19, 2021Updated 4 years ago
- ☆22Apr 2, 2015Updated 11 years ago
- Bioinformatic approach to identify functional transcription factor binding motifs☆11May 16, 2022Updated 4 years ago
- Predicting Protein – Ligand Interaction by using Deep Learning Models☆11Nov 13, 2018Updated 7 years ago
- ATAC-seq processing pipeline☆34Apr 8, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Python script for calling SNPs, MNPs, and indels in mitochondrial DNA.☆10Apr 19, 2016Updated 10 years ago
- dead Simple Queue - Slurm arrays for files with jobs in them.☆25Apr 13, 2026Updated last month
- Computational Framework to reconstructing tumor clone structures☆15Mar 31, 2021Updated 5 years ago
- Materiales del taller sobre expresiones regulares realizado en febrero de 2021☆10Mar 6, 2021Updated 5 years ago
- Genetic Relationship And Fingerprinting☆14Feb 6, 2023Updated 3 years ago
- Gene lists related to cancer immunotherapy☆14Sep 11, 2024Updated last year
- A deep convolutional neural network for the accurate prediction of silencers☆16May 23, 2023Updated 2 years ago