GO enrichment with python -- pandas meets networkx
☆88Jul 15, 2020Updated 6 years ago
Alternatives and similar repositories for goenrich
Users that are interested in goenrich are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- python wrapper to dpryan79's bigwig library using cffi☆19May 13, 2016Updated 10 years ago
- Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline☆26Oct 5, 2015Updated 10 years ago
- Probabilistic single-cell pseudotime with Edward+Tensorflow☆12Oct 5, 2017Updated 8 years ago
- conda recipes for genomic data☆84Jul 31, 2021Updated 5 years ago
- Python library to handle Gene Ontology (GO) terms☆908Aug 21, 2026Updated last week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- PROGENY Python implementation☆12Apr 5, 2022Updated 4 years ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 8 years ago
- Log command line events to a graph database :)☆13Mar 12, 2016Updated 10 years ago
- Copy number estimation of highly duplicated sequences☆10Aug 15, 2017Updated 9 years ago
- A small library for ranges/intervals, for use with genomic data.☆17Nov 27, 2012Updated 13 years ago
- A tool for Read Multi-Mapper Resolution☆24Feb 15, 2017Updated 9 years ago
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Mar 3, 2017Updated 9 years ago
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆197Aug 1, 2026Updated 3 weeks ago
- Gene Set Enrichment Analysis in Python☆709Aug 5, 2026Updated 3 weeks ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Build components for CloudMan, Galaxy on the Cloud, or Galaxy Server☆20Jun 27, 2017Updated 9 years ago
- Sample an approximate number of reads from a fastq file without reading the entire file☆11Jun 20, 2017Updated 9 years ago
- Shape analysis of high-throughput data☆19Feb 24, 2016Updated 10 years ago
- OBO-formatted ontologies → networkx (Python 3)☆157Jun 3, 2026Updated 2 months ago
- Converts p-values in q-values, see (Storey and Tibshirani, 2003)☆29May 22, 2017Updated 9 years ago
- Dorothea package in Python☆11Apr 5, 2022Updated 4 years ago
- An alignment-free approach to estimating exon-inclusion ratios without a reference transcriptome☆10Jan 25, 2019Updated 7 years ago
- XL-mHG: A Semiparametric Test for Enrichment in Ranked Lists.☆13Jan 19, 2023Updated 3 years ago
- significance testing over interval overlaps☆30Jul 11, 2020Updated 6 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Jupyter notebook based genomic data visualization toolkit.☆260Updated this week
- Very simple, pure python, BAM file reader☆80Feb 20, 2019Updated 7 years ago
- A client for the Ensembl REST API written in the Python programming language☆29Aug 22, 2026Updated last week
- Access to Biological Web Services from Python.☆342Jun 12, 2026Updated 2 months ago
- a cythonized, extended version of the interval search tree in bx☆30Jun 4, 2019Updated 7 years ago
- A Python interface to the BEDTools API using Cython☆28Mar 16, 2011Updated 15 years ago
- Analysis Framework for Biological Data from High Throughput Experiments☆34Aug 24, 2016Updated 10 years ago
- An Improved Algorithm to Measure the Semantic Similarity of Gene Ontology Terms☆19Mar 23, 2020Updated 6 years ago
- What's The Function of these genes?☆22Mar 17, 2017Updated 9 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation☆139Dec 15, 2022Updated 3 years ago
- Lift-over alignments from variant-aware references☆34Mar 4, 2023Updated 3 years ago
- Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…☆53Nov 5, 2022Updated 3 years ago
- Transcripts annotation and GO enrichment Fisher tests☆27Apr 28, 2023Updated 3 years ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Jul 7, 2023Updated 3 years ago
- A Python package for gene network analysis☆33Jun 22, 2022Updated 4 years ago
- A pure-python implementation of the UpSet suite of visualisation methods by Lex, Gehlenborg et al.☆324Jun 4, 2018Updated 8 years ago