Alternatives and similar repositories for goenrich:

Users that are interested in goenrich are comparing it to the libraries listed below

• r-bioinformatics / edgePy
  A Python implementation of edgeR for differential expression analysis
  ☆99Updated 5 years ago
• konstantint / pyliftover
  Pure-python implementation of UCSC liftOver genome coordinate conversion
  ☆92Updated 11 months ago
• sebriois / biomart
  Python biomart API
  ☆64Updated last year
• jhkorhonen / MOODS
  MOODS: Motif Occurrence Detection Suite
  ☆95Updated last year
• brentp / cruzdb
  python access to UCSC genomes database
  ☆135Updated 4 years ago
• vanheeringen-lab / gimmemotifs
  Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…
  ☆114Updated last year
• openvax / varcode
  Library for manipulating genomic variants and predicting their effects
  ☆82Updated 6 months ago
• PMBio / scLVM
  scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…
  ☆104Updated 2 years ago
• openvax / gtfparse
  Parsing tools for GTF (gene transfer format) files
  ☆115Updated 9 months ago
• davidaknowles / leafcutter
  Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …
  ☆210Updated 7 months ago
• 3DGenomes / TADbit
  TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…
  ☆100Updated 3 weeks ago
• thelovelab / tximport
  Transcript quantification import for modular pipelines
  ☆137Updated 10 months ago
• simon-anders / htseq
  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
  ☆121Updated 4 years ago
• shwhalen / targetfinder
  ☆83Updated 3 years ago
• brentp / combat.py
  python / numpy / pandas / patsy version of ComBat for removing batch effects.
  ☆103Updated 6 years ago
• jrderuiter / pybiomart
  A simple pythonic interface to biomart.
  ☆55Updated 4 years ago
• CGATOxford / cgat
  Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps
  ☆124Updated 6 years ago
• alyssafrazee / polyester
  Bioconductor package "polyester", devel version. RNA-seq read simulator.
  ☆91Updated 3 years ago
• nickFurlotte / pylmm
  A fast and lightweight python-based linear mixed-model solver for use in genome-wide association studies.
  ☆43Updated 9 years ago
• CRG-Barcelona / bwtool
  A tool for bigWig files.
  ☆118Updated 6 years ago
• nsalomonis / altanalyze
  AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-…
  ☆100Updated 2 years ago
• ratschlab / spladder
  Tool for the detection and quantification of alternative splicing events from RNA-Seq data.
  ☆106Updated 3 months ago
• pachterlab / scRNA-Seq-TCC-prep
  Preprocessing of single-cell RNA-Seq (deprecated)
  ☆62Updated 5 years ago
• brentp / fishers_exact_test
  Fishers Exact Test for Python (Cython)
  ☆64Updated 4 months ago
• wckdouglas / diffexpr
  Porting DESeq2 into python via rpy2
  ☆68Updated last year
• cbg-ethz / NGS-pipe
  NGS-pipe: next-generation sequencing pipelines for precision oncology
  ☆108Updated 5 years ago
• genome / sciclone
  An R package for inferring the subclonal architecture of tumors
  ☆117Updated last year
• harbourlab / SparK
  Publication quality NGS track plotting
  ☆109Updated 2 years ago
• BUStools / bustools
  Tools for working with BUS files
  ☆93Updated 3 months ago
• JohnLonginotto / pybam
  Very simple, pure python, BAM file reader
  ☆79Updated 5 years ago