jdrudolph / goenrichView external linksLinks
GO enrichment with python -- pandas meets networkx
☆88Jul 15, 2020Updated 5 years ago
Alternatives and similar repositories for goenrich
Users that are interested in goenrich are comparing it to the libraries listed below
Sorting:
- python wrapper to dpryan79's bigwig library using cffi☆19May 13, 2016Updated 9 years ago
- PROGENY Python implementation☆12Apr 5, 2022Updated 3 years ago
- conda recipes for genomic data☆84Jul 31, 2021Updated 4 years ago
- Probabilistic single-cell pseudotime with Edward+Tensorflow☆12Oct 5, 2017Updated 8 years ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 7 years ago
- A tool for Read Multi-Mapper Resolution☆24Feb 15, 2017Updated 8 years ago
- XL-mHG: A Semiparametric Test for Enrichment in Ranked Lists.☆13Jan 19, 2023Updated 3 years ago
- Shape analysis of high-throughput data☆19Feb 24, 2016Updated 9 years ago
- Python library to handle Gene Ontology (GO) terms☆876Dec 18, 2025Updated last month
- An alignment-free approach to estimating exon-inclusion ratios without a reference transcriptome☆10Jan 25, 2019Updated 7 years ago
- Copy number estimation of highly duplicated sequences☆10Aug 15, 2017Updated 8 years ago
- Converts p-values in q-values, see (Storey and Tibshirani, 2003)☆29May 22, 2017Updated 8 years ago
- Gene Set Enrichment Analysis in Python☆690Dec 17, 2025Updated last month
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆195Feb 1, 2026Updated last week
- Sample an approximate number of reads from a fastq file without reading the entire file☆11Jun 20, 2017Updated 8 years ago
- Very simple, pure python, BAM file reader☆79Feb 20, 2019Updated 6 years ago
- Dorothea package in Python☆11Apr 5, 2022Updated 3 years ago
- ☆22Jan 6, 2026Updated last month
- What's The Function of these genes?☆22Mar 17, 2017Updated 8 years ago
- Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…☆52Nov 5, 2022Updated 3 years ago
- Flexible Integration of Data with Deep LEarning☆51Mar 24, 2023Updated 2 years ago
- Log command line events to a graph database :)☆13Mar 12, 2016Updated 9 years ago
- A Python package for gene network analysis☆32Jun 22, 2022Updated 3 years ago
- Access to Biological Web Services from Python.☆326Jan 8, 2026Updated last month
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Jul 7, 2023Updated 2 years ago
- Finding the causality in biological pathways☆14Jul 12, 2023Updated 2 years ago
- A pure-python implementation of the UpSet suite of visualisation methods by Lex, Gehlenborg et al.☆323Jun 4, 2018Updated 7 years ago
- Jupyter notebook based genomic data visualization toolkit.☆249Dec 4, 2025Updated 2 months ago
- Differential Count Data Analysis Toolbox☆61Feb 5, 2024Updated 2 years ago
- Platform for integrating genomic analysis with Jupyter Notebooks.☆44Jul 25, 2025Updated 6 months ago
- Denoising Autoencoders for Phenotype Stratification☆42Nov 9, 2018Updated 7 years ago
- MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation☆137Dec 15, 2022Updated 3 years ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Apr 12, 2024Updated last year
- Transcripts annotation and GO enrichment Fisher tests☆27Apr 28, 2023Updated 2 years ago
- A pipeline to assess the quantification of transcripts.☆19Jun 6, 2022Updated 3 years ago
- An Improved Algorithm to Measure the Semantic Similarity of Gene Ontology Terms☆18Mar 23, 2020Updated 5 years ago
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆31Oct 9, 2017Updated 8 years ago
- PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using …☆30Jun 17, 2025Updated 7 months ago
- Lift-over alignments from variant-aware references☆34Mar 4, 2023Updated 2 years ago