jdrudolph / goenrichLinks
GO enrichment with python -- pandas meets networkx
☆88Updated 5 years ago
Alternatives and similar repositories for goenrich
Users that are interested in goenrich are comparing it to the libraries listed below
Sorting:
- Library for manipulating genomic variants and predicting their effects☆84Updated last year
- Pure-python implementation of UCSC liftOver genome coordinate conversion☆95Updated last year
- python access to UCSC genomes database☆136Updated 4 years ago
- A simple pythonic interface to biomart.☆55Updated 5 years ago
- Python biomart API☆66Updated 2 years ago
- Parsing tools for GTF (gene transfer format) files☆121Updated 4 months ago
- A Python implementation of edgeR for differential expression analysis☆103Updated 6 years ago
- Simple FASTQ quality assessment using Python☆109Updated 4 years ago
- Flexible Integration of Data with Deep LEarning☆50Updated 2 years ago
- Efficient handling of FASTQ files from Python☆51Updated last month
- Fishers Exact Test for Python (Cython)☆66Updated 3 months ago
- MOODS: Motif Occurrence Detection Suite☆103Updated 2 years ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- Scalable RNA-seq analysis☆73Updated 4 years ago
- 3D hotspot mutation proximity analysis tool☆47Updated 2 years ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆124Updated 5 years ago
- Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps☆124Updated 6 years ago
- Tools for manipulating biological data, particularly multiple sequence alignments☆157Updated 10 months ago
- Super small biological datasets for unit testing☆61Updated 5 years ago
- Simple pure Python SAM parser and objects for working with SAM records☆64Updated 3 years ago
- Resource of human chromosome schematics & images☆94Updated 10 months ago
- Sequana: a set of Snakemake NGS pipelines☆146Updated 4 months ago
- JHU EN.600.649: Computational Genomics: Applied Comparative Genomics☆57Updated 7 years ago
- Extension for Jupyter which integrates igv.js☆154Updated 2 years ago
- python / numpy / pandas / patsy version of ComBat for removing batch effects.☆105Updated 6 years ago
- Tools for next-generation sequencing analysis☆88Updated 6 years ago
- Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data☆87Updated 4 years ago
- Retrieve data in genomic intervals with a Python interface for tabix.☆82Updated 7 years ago
- MyGene.info: A BioThings API for gene annotations☆127Updated last month
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆122Updated 2 months ago