jdrudolph / goenrichLinks
GO enrichment with python -- pandas meets networkx
☆88Updated 5 years ago
Alternatives and similar repositories for goenrich
Users that are interested in goenrich are comparing it to the libraries listed below
Sorting:
- Python biomart API☆68Updated 2 years ago
- Library for manipulating genomic variants and predicting their effects☆85Updated last year
- python access to UCSC genomes database☆136Updated 5 years ago
- A simple pythonic interface to biomart.☆56Updated 5 years ago
- Pure-python implementation of UCSC liftOver genome coordinate conversion☆97Updated last year
- MOODS: Motif Occurrence Detection Suite☆106Updated 2 years ago
- Parsing tools for GTF (gene transfer format) files☆121Updated 6 months ago
- Flexible Integration of Data with Deep LEarning☆50Updated 2 years ago
- Bioconductor package "polyester", devel version. RNA-seq read simulator.☆94Updated 4 years ago
- Retrieve data in genomic intervals with a Python interface for tabix.☆82Updated 8 years ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆126Updated 5 years ago
- A Python implementation of edgeR for differential expression analysis☆103Updated 6 years ago
- Fishers Exact Test for Python (Cython)☆66Updated 6 months ago
- Core functionality of the CGAT code☆33Updated last month
- Tools for manipulating biological data, particularly multiple sequence alignments☆158Updated last month
- OLD REPOSITORY - Go to☆31Updated 7 years ago
- Simple FASTQ quality assessment using Python☆108Updated 4 years ago
- Scalable RNA-seq analysis☆73Updated 4 years ago
- Downloader for ENCODE☆32Updated 4 years ago
- Extension for Jupyter which integrates igv.js☆154Updated 2 years ago
- List of tools and resources related to the 10x Genomics GEMCode/Chromium system☆85Updated 6 years ago
- Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.☆118Updated 3 months ago
- Rapid Mapping-based Isoform Quantification from RNA-Seq Reads☆126Updated 3 years ago
- Converts p-values in q-values, see (Storey and Tibshirani, 2003)☆29Updated 8 years ago
- A fast and lightweight python-based linear mixed-model solver for use in genome-wide association studies.☆43Updated 9 years ago
- Transcript quantification import for modular pipelines☆140Updated 3 weeks ago
- MyGene.info: A BioThings API for gene annotations☆128Updated 2 weeks ago
- Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps☆124Updated 6 years ago
- Efficient handling of FASTQ files from Python☆51Updated last month