Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.
☆23Nov 7, 2025Updated 6 months ago
Alternatives and similar repositories for 2023-nr-clustering
Users that are interested in 2023-nr-clustering are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Protein Structure Archiver☆14Sep 10, 2025Updated 7 months ago
- exploring viral genome assembly with variation graph tools☆20May 18, 2020Updated 5 years ago
- Fast tool to build the core genome of prokaryotic genomes. Can handle large datasets. Dependencis: Usearch & Numpy☆10Nov 26, 2025Updated 5 months ago
- Metabolic scanning and annotation of Metagenomes☆10Dec 18, 2025Updated 4 months ago
- ☆15Apr 3, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t☆12Feb 23, 2025Updated last year
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆90Mar 12, 2026Updated last month
- Precise host read removal☆122Apr 13, 2026Updated 3 weeks ago
- ☆10Dec 17, 2025Updated 4 months ago
- Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Sec…☆15May 24, 2023Updated 2 years ago
- MetagenOmic read Re-Assigner and abundance quantifier☆20Jan 31, 2025Updated last year
- ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…☆61Apr 29, 2025Updated last year
- Simple R utilities for working with HMMER☆19Oct 3, 2024Updated last year
- CAMITAX: Taxon labels for microbial genomes☆31Dec 14, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Simple Python interface to CoverM's fast coverage estimation functions☆10Dec 20, 2024Updated last year
- scripts for microbiome analysis☆12Jul 25, 2024Updated last year
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆13Jan 19, 2026Updated 3 months ago
- MAGScoT - a MAG scoring and refinement tool☆44Apr 8, 2026Updated last month
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆33Feb 17, 2026Updated 2 months ago
- A repo to reproduce the experiments in the YACHT manuscript☆12Nov 2, 2023Updated 2 years ago
- ☆23May 13, 2024Updated last year
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆52Mar 26, 2026Updated last month
- StrainEst - abundance estimation of strains☆20Jan 17, 2020Updated 6 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Python bindings for the TaxonKit library☆43Apr 6, 2026Updated last month
- fast, multithreaded sourmash operations: search, compare, and gather.☆25Apr 27, 2026Updated last week
- A straightforward bioinformatic pipeline for detecting a bacterial strain in one or more metagenome(s).☆19Jul 10, 2018Updated 7 years ago
- ULTRA Locates Tandemly Repetitive Areas☆40Oct 23, 2025Updated 6 months ago
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 6 months ago
- Catalogue of pairwise alignment algorithms and benchmarks☆25Jan 6, 2026Updated 4 months ago
- A Python package for obtaining, parsing and exploring biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆50Apr 24, 2026Updated 2 weeks ago
- This package contains the BLAST Viewer Tool.☆13Apr 7, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Implementation of FoldMark: Safeguarding Protein Structure Generative Models with Distributional and Evolutionary Watermarking☆24Apr 19, 2026Updated 2 weeks ago
- Functional Analysis of Metagenomes by Likelihood Inference☆17Sep 8, 2025Updated 8 months ago
- Assessing the quality of prokaryotic genomes, filtering and dereplication☆11Aug 26, 2022Updated 3 years ago
- Feature map and function annotation of Proteins☆35Jun 13, 2024Updated last year
- A Quality Control filter and parser for NCBI BLAST XML results.☆17Aug 21, 2020Updated 5 years ago
- Interactive, web-based BLAST results visualization tool. Accessible at https://kablammo.wasmuthlab.org.☆66Sep 30, 2022Updated 3 years ago
- Assessing and Improving the quality of metagenomic assemblies☆31Feb 21, 2022Updated 4 years ago