Arcadia-Science / 2023-nr-clusteringLinks
Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.
☆23Updated 2 years ago
Alternatives and similar repositories for 2023-nr-clustering
Users that are interested in 2023-nr-clustering are comparing it to the libraries listed below
Sorting:
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆75Updated 3 months ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆28Updated 5 months ago
- GCsnap: interactive snapshots for the comparison of protein-coding genomic contexts☆30Updated last year
- ☆41Updated 3 months ago
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆23Updated 2 years ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated 2 years ago
- Learning and Aligning Large Protein Families with support of protein language models.☆27Updated last week
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 3 weeks ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆56Updated 6 months ago
- Simple phylogenetic tree visualization python package for phylogenetic analysis☆55Updated last year
- Pipeline for major biological analyses.☆35Updated 3 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated last week
- Bacterial Annotation by Learned Representation of Genes☆58Updated 4 years ago
- Python bindings for the TaxonKit library☆40Updated 3 months ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆48Updated 9 months ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 3 years ago
- UFCG: Universal Fungal Core Genes☆34Updated 2 months ago
- ☆31Updated 9 months ago
- Nail is an Alignment Inference tooL☆52Updated 3 weeks ago
- ☆33Updated 2 months ago
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆35Updated last week
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆64Updated last week
- a python package for automated generation of phylogenetic trees from genbank files☆23Updated 6 months ago
- PHANOTATE: a gene caller for phages.☆78Updated 10 months ago
- Discovery of conserved gene clusters in multiple genomes☆97Updated 4 months ago
- ☆17Updated 3 years ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆34Updated last year
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆89Updated 4 months ago
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆23Updated 2 weeks ago