Arcadia-Science / 2023-nr-clustering
Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.
☆23Updated last year
Alternatives and similar repositories for 2023-nr-clustering:
Users that are interested in 2023-nr-clustering are comparing it to the libraries listed below
- Universal and efficient core gene phylogeny with Foldseek and ProstT5☆55Updated 3 weeks ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆27Updated 3 weeks ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆40Updated 4 months ago
- Python bindings for the TaxonKit library☆38Updated 3 weeks ago
- A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.☆20Updated last month
- ☆38Updated last week
- Nail is an Alignment Inference tooL☆47Updated last week
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated 2 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 2 weeks ago
- a python package for automated generation of phylogenetic trees from genbank files☆21Updated last month
- Improved Inference of Ortholog Groups using Hidden Markov Models☆33Updated 2 months ago
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆17Updated 8 months ago
- Pipeline for major biological analyses.☆34Updated 3 years ago
- A workflow and scripts for large-scale antiSMASH analyses☆39Updated last month
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆24Updated 6 months ago
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆35Updated last year
- Bacterial Annotation by Learned Representation of Genes☆55Updated 4 years ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆37Updated 4 months ago
- MacSyFinder models allowing for a systematic search of anti-phage systems☆23Updated 2 months ago
- ☆17Updated 2 years ago
- Simple phylogenetic tree visualization python package for phylogenetic analysis☆48Updated 7 months ago
- ☆31Updated 3 years ago
- Metagenome analysis using the Kraken software suite☆31Updated 2 years ago
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆20Updated 2 months ago
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- Python tool to reduce size and redundancy of phylogenetic datasets☆36Updated last year
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆48Updated last month
- Nanopore UMI-linked consensus sequencing☆15Updated 4 years ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆33Updated last year
- UFCG: Universal Fungal Core Genes☆32Updated 3 months ago