Alternatives and similar repositories for 2023-nr-clustering

Users that are interested in 2023-nr-clustering are comparing it to the libraries listed below

• steineggerlab / unicore
  Universal and efficient core gene phylogeny with Foldseek and ProstT5
  ☆58Updated 2 weeks ago
• Finn-Lab / SanntiS
  SMBGC Annotation using Neural Networks Trained on Interpro Signatures
  ☆27Updated last month
• BolognaBiocomp / deepsig
  DeepSig - Predictor of signal peptides in proteins based on deep learning
  ☆26Updated 2 years ago
• NBChub / bgcflow
  Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)
  ☆40Updated 5 months ago
• timghaly / EcoFoldDB
  Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.
  ☆13Updated 2 months ago
• TravisWheelerLab / nail
  Nail is an Alignment Inference tooL
  ☆48Updated 2 weeks ago
• drboothtj / getphylo
  a python package for automated generation of phylogenetic trees from genbank files
  ☆22Updated 2 months ago
• althonos / pyrodigal-gv
  A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.
  ☆17Updated 9 months ago
• kelwyres / Bactabolize
  ☆38Updated 2 weeks ago
• bioforensics / pytaxonkit
  Python bindings for the TaxonKit library
  ☆40Updated 3 weeks ago
• JLSteenwyk / orthohmm
  Improved Inference of Ortholog Groups using Hidden Markov Models
  ☆34Updated 3 months ago
• cjneely10 / MetaSanity
  Pipeline for major biological analyses.
  ☆35Updated 3 years ago
• Kalan-Lab / lsaBGC
  lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters
  ☆37Updated last month
• fhlab / UMIC-seq
  Nanopore UMI-linked consensus sequencing
  ☆16Updated 4 years ago
• mdmparis / antidefensefinder_2024
  ☆7Updated 8 months ago
• nmatzke / 3diphy
  Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…
  ☆21Updated 3 weeks ago
• PNNL-CompBio / Snekmer
  Pipeline to apply encoded Kmer analysis to protein sequences
  ☆16Updated this week
• PAiewsakun / GRAViTy
  ☆17Updated 3 years ago
• gamcil / clustermap.js
  ☆31Updated 3 years ago
• mdmparis / defense-finder-models
  MacSyFinder models allowing for a systematic search of anti-phage systems
  ☆23Updated 3 months ago
• RogerLab / Eukfinder
  Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data
  ☆23Updated last month
• apcamargo / taxopy
  A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers
  ☆49Updated 4 months ago
• martin-steinegger / kraken-protocol
  Metagenome analysis using the Kraken software suite
  ☆32Updated 2 years ago
• moshi4 / phyTreeViz
  Simple phylogenetic tree visualization python package for phylogenetic analysis
  ☆48Updated 8 months ago
• phac-nml / gview-wiki
  The gview wiki migrated to GitHub.
  ☆11Updated 4 years ago
• ku-cbd / PhageBoost
  Rapid discovery of novel prophages using biological feature engineering and machine learning
  ☆37Updated 5 months ago
• althonos / pyfamsa
  Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
  ☆31Updated 3 months ago
• steineggerlab / ufcg
  UFCG: Universal Fungal Core Genes
  ☆33Updated 4 months ago
• michaelkyu / MobMess
  ☆20Updated 3 years ago
• zreitz / multismash
  A workflow and scripts for large-scale antiSMASH analyses
  ☆41Updated 2 months ago