k-mer-based non-Bayesian Taxonomic Classifier
☆20May 28, 2026Updated 3 months ago
Alternatives and similar repositories for raxtax
Users that are interested in raxtax are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- De novo clustering of long transcript reads into genes☆24Dec 15, 2025Updated 9 months ago
- a python package for finding tandem repeats from genomic sequences☆39Jun 11, 2026Updated 3 months ago
- Genome size estimation from long read overlaps☆97Sep 8, 2026Updated last week
- Remove human reads from a sequencing run☆54Jun 29, 2026Updated 2 months ago
- A Rust-Based suite of utilities for ultra-fast genomic feature extraction☆47Dec 18, 2025Updated 9 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Development repo for pyani-plus (the next iteration of pyani)☆36Updated this week
- Improved long-read assembly by preserving contained reads☆29Aug 22, 2024Updated 2 years ago
- Whole Genome Alignment Tools☆223Nov 6, 2025Updated 10 months ago
- ☆13Jul 8, 2026Updated 2 months ago
- ☆15Dec 3, 2024Updated last year
- Fast DNA search and [host] depletion using minimizers☆126Sep 9, 2026Updated last week
- Clustering tool optimized for sparse distance matrices: ~16M elements with ~190M connections clustered in minutes.☆16Sep 12, 2026Updated last week
- Scatterbar - data visualization for proportional data across many spatially resolved coordinates☆13Mar 3, 2025Updated last year
- Fast approximate string searching☆168Aug 11, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆10Jun 9, 2025Updated last year
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆66Jun 16, 2025Updated last year
- CLI tool for querying the Genome Taxonomy Database (GTDB). Batch search, genome cards, taxon lineages, and cross-release taxonomic compar…☆33Aug 31, 2026Updated 2 weeks ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆48Updated this week
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Aug 20, 2025Updated last year
- adaptive genome assembly using nanopore sequencing☆27Sep 11, 2026Updated last week
- Tool to flag foldback and chimeric artifacts in long-read sequence alignment files☆47Jul 1, 2026Updated 2 months ago
- Synteny-enhanced annotation of Bacteriophage genes☆19Updated this week
- Iterate k-min-mers from a DNA sequence in Rust☆13Apr 8, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆21Feb 15, 2025Updated last year
- Extremely fast and accurate Nanopore demultiplexing☆106Sep 5, 2026Updated 2 weeks ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆22Aug 19, 2026Updated last month
- ☆16May 1, 2025Updated last year
- Ultrafast identification of signature sequences in microbial genomes☆20Updated this week
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆63Jul 5, 2026Updated 2 months ago
- ☆20Updated this week
- The Metagenomics-Toolkit is a scalable, data agnostic workflow that automates the analysis of short and long metagenomic reads obtained f…☆28Updated this week
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- Taxonomy classification of viral sequences / contigs☆13Jul 15, 2025Updated last year
- snakemake-powered cli to download genomes using NCBI datasets☆15Aug 14, 2025Updated last year
- Non-redundant pangenome assemblies from multiple genomes or bins☆15Aug 6, 2026Updated last month
- A tool for generating consensus long-read assemblies for bacterial genomes☆239Updated this week
- An extensible and performant aligner and read mapper☆105Updated this week
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆37Sep 11, 2025Updated last year