Tool intended to pull out sequences and annotations between insertion sites specified by the user.
☆15Apr 10, 2026Updated 6 months ago
Alternatives and similar repositories for Magphi
Users that are interested in Magphi are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A microbial genomic analysis pipeline used by the Djordjevic Lab☆14Feb 9, 2025Updated last year
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆18Jul 16, 2024Updated 2 years ago
- A tooL for Prokaryotic Phylogeny And Clustering Analysis☆14Aug 5, 2026Updated 3 months ago
- AMR/VF LGT focused bacterial genomics analysis workflow☆29Feb 19, 2026Updated 8 months ago
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…☆15Feb 27, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆23Mar 8, 2024Updated 2 years ago
- Finding regions of similarity between plasmids☆17Jul 15, 2026Updated 3 months ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Mar 12, 2024Updated 2 years ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆40Aug 21, 2026Updated 2 months ago
- 🧮 🔢 Generate multi-sample k-mer count matrix from WGS☆11Jan 17, 2026Updated 9 months ago
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- snpless-nf - A Nextflow pipeline for time-course analysis with bacterial NGS whole-genome data.☆14May 12, 2024Updated 2 years ago
- Gene Absence Presence Identification tool.☆27Mar 28, 2025Updated last year
- rapid serotyping of Vibrio parahaemolyticus from whole genome sequencing data using serogroup-specific genes☆10Sep 2, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆22Nov 24, 2024Updated last year
- 🐪Classification through yAML Heuristic Mapping Protocol 🐪☆10Updated this week
- Three bacterial GWAS methods all rolled into one easy-to-use R package☆22Apr 16, 2024Updated 2 years ago
- Add biological annotations to variants in a given VCF file.☆33Apr 4, 2026Updated 7 months ago
- 🦠🧬 Unraveling Viral Genomes from Metagenomes☆11Jul 30, 2026Updated 3 months ago
- Genomic Islands From Roary Pangenomes☆10Jul 16, 2021Updated 5 years ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Feb 15, 2019Updated 7 years ago
- Use tbl2asn forever by pretending that it's still 2019☆12Jan 24, 2020Updated 6 years ago
- software to identify primers that can distinguish genomes☆20Aug 31, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Benchmarking FASTQ compression with 'mature' compression algorithms☆44Sep 19, 2024Updated 2 years ago
- ☆18Jun 11, 2024Updated 2 years ago
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).☆28May 7, 2026Updated 6 months ago
- ☆52Jun 11, 2025Updated last year
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated 2 years ago
- Scripts for finding restriction-modification systems in bacterial genomes.☆11Nov 9, 2023Updated 2 years ago
- kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more☆50Updated this week
- Bifrost graph gene caller.☆102Aug 31, 2026Updated 2 months ago
- Visualisation application for Klebsiella genotypes generated by Kleborate.☆11Mar 10, 2026Updated 7 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆16Jul 24, 2026Updated 3 months ago
- k-mers and the like☆22Oct 18, 2026Updated 2 weeks ago
- zDB: comparative bacterial genomics made easy☆44Oct 1, 2026Updated last month
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆108Jan 22, 2026Updated 9 months ago
- Workflow for whole genome sequencing based phylogeny of Illumina and ONT R9/R10 data.☆11Oct 7, 2026Updated last month
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆40Sep 22, 2022Updated 4 years ago
- Rapid discovery of reciprocal best blast pairs.☆10Nov 9, 2024Updated last year