matteofigliuzzi / bmDCALinks
☆18Updated 7 years ago
Alternatives and similar repositories for bmDCA
Users that are interested in bmDCA are comparing it to the libraries listed below
Sorting:
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆35Updated 4 years ago
- Code used in the manuscript for De Novo Design of Bioactive Protein Switches☆16Updated 6 years ago
- Autoregressive networks for protein☆38Updated 3 months ago
- Some scripts that I keep using over and over.☆18Updated 5 months ago
- Rosetta FunFolDes – a general framework for the computational design of functional proteins.☆19Updated 6 years ago
- test☆14Updated 4 years ago
- Use AlphaFold by Deep Mind in Batch Mode + Multiprocessing☆23Updated 3 years ago
- Physical energy function for protein sequence design☆30Updated 2 years ago
- PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.☆29Updated 2 years ago
- Tutorial files☆11Updated 10 months ago
- ☆29Updated 4 years ago
- ☆17Updated last year
- ☆18Updated 4 months ago
- ☆32Updated last year
- This repo contains the collection of codes to find designer interfacial mutations☆17Updated last year
- ☆31Updated 4 years ago
- Protein design and variant prediction using autoregressive generative models☆23Updated 2 years ago
- ☆9Updated 7 months ago
- Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox☆20Updated 6 years ago
- Using Rotamer Interaction Fields from RIFGen/Dock in python☆16Updated 4 years ago
- Predicting Nanobody Binding Epitopes Based on a Pretrained RoBERTa-based Model☆15Updated last year
- Code for designing biased protein states☆13Updated last month
- A Python package to manage protein design workflows on computing clusters and local machines. Documentation can be found here: https://pr…☆19Updated 3 weeks ago
- Differentiable Pairing using Alignment-based Language Models☆22Updated last year
- ☆21Updated 8 months ago
- Code associated with the paper 'Cracking the blackbox of deep sequence-based protein-protein interaction prediction'☆24Updated last year
- Fast and accurate protein structure prediction☆53Updated 5 months ago
- ☆30Updated last month
- ☆9Updated 2 years ago
- ☆36Updated 8 months ago