csi-greifflab / manuscript_insilico_antibody_generationLinks
☆23Updated 4 years ago
Alternatives and similar repositories for manuscript_insilico_antibody_generation
Users that are interested in manuscript_insilico_antibody_generation are comparing it to the libraries listed below
Sorting:
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆35Updated 5 years ago
- The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…☆28Updated last year
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Updated 4 years ago
- ☆25Updated last year
- Machine learning-driven antibody design☆60Updated 2 years ago
- A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking☆29Updated 3 months ago
- Source code for fitting thermodynamic models (MoCHI), downstream analyses and to reproduce all figures in the following publication: Mapp…☆21Updated 2 years ago
- A convolutional neural network model to predict spatial charge map (SCM) score, a molecular dynamics simulation-based model to predict an…☆28Updated 3 years ago
- Machine learning models for antibody sequences in PyTorch☆41Updated 4 years ago
- ☆25Updated 2 months ago
- Using Rotamer Interaction Fields from RIFGen/Dock in python☆16Updated 4 years ago
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆23Updated last year
- ☆27Updated 2 weeks ago
- An antibody-specific language model focusing on NGL prediction☆31Updated last year
- A program fror inter-protein contact prediction from structures of interacting proteins☆19Updated last year
- ☆53Updated 2 months ago
- DDGScan: an integrated parallel workflow for the in silico point mutation scan of protein☆48Updated last year
- Fast and accurate protein domain segmentation using Invariant Point Attention☆42Updated 5 months ago
- Graph Network for protein-protein interface including language model features☆32Updated last year
- ☆45Updated 7 months ago
- Rosetta FunFolDes – a general framework for the computational design of functional proteins.☆21Updated 6 years ago
- Fast deep learning methods for large-scale protein-protein interaction screening☆85Updated 2 months ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆25Updated last year
- ☆50Updated 2 years ago
- Set of useful HADDOCK utility scripts☆55Updated last month
- ☆25Updated 2 years ago
- Code for the paper "DLAB - Deep learning methods for structure-basedvirtual screening of antibodies"☆31Updated 3 years ago
- Fragment binding prediction with ColabFold☆37Updated 7 months ago
- ☆41Updated last year
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆59Updated 4 years ago