Alternatives and similar repositories for topobuilder:

Users that are interested in topobuilder are comparing it to the libraries listed below

• bene837 / af2seq
  ☆41Updated 5 months ago
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆36Updated this week
• RosettaCommons / Rosetta-DL
  A bundle of deep-learning packages for biomolecular structure prediction and design contributed to the Rosetta Commons
  ☆34Updated 2 years ago
• leandroradusky / pyfoldx
  pyFoldX: python bindings for FoldX.
  ☆44Updated 3 years ago
• KULL-Centre / _2024_cagiada_stability
  ☆61Updated last month
• LBM-EPFL / CARBonAra
  Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…
  ☆36Updated 2 months ago
• patrickbryant1 / AFProfile
  Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
  ☆65Updated 5 months ago
• labstructbioinf / localpdb
  Python package to manage protein structures and their annotations
  ☆42Updated 11 months ago
• Kuhlman-Lab / evopro
  ☆72Updated this week
• clami66 / AF_unmasked
  Source code and examples for AlphaFold Unmasked
  ☆55Updated last month
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆49Updated 8 months ago
• Protein-Engineering-Framework / PyPEF
  PyPEF – Pythonic Protein Engineering Framework
  ☆23Updated 2 months ago
• Rappsilber-Laboratory / AlphaLink2
  AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer
  ☆53Updated 3 weeks ago
• data2code / afpdb
  Efficient manipulation of protein structures in Python
  ☆51Updated 3 months ago
• CarbonMatrixLab / carbonnovo
  Official open-source of CarbonNovo: Joint Design of Protein Structure and Sequence Using a Unified Energy-based Model
  ☆16Updated 2 months ago
• wells-wood-research / PDBench
  PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.
  ☆27Updated 2 years ago
• liuyf020419 / SCUBA-D
  ☆52Updated 10 months ago
• flyark / AFM-LIS
  Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)
  ☆49Updated 5 months ago
• JinyuanSun / DDGScan
  DDGScan: an integrated parallel workflow for the in silico point mutation scan of protein
  ☆44Updated 10 months ago
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆35Updated 2 months ago
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆47Updated last month
• dina-lab3D / CombFold
  ☆80Updated 4 months ago
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆68Updated last month
• StatPhysBio / protein_holography
  Code for holographic machine learning of proteins
  ☆22Updated 3 months ago
• AspirinCode / AlphaPPImd
  Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks
  ☆27Updated 8 months ago
• pylelab / rMSA
  RNA Multiple Sequence Alignment
  ☆31Updated last year
• oxpig / kasearch
  KA-Search: Rapid and exhaustive sequence identity search of known antibodies
  ☆22Updated 7 months ago
• bwicky / oligomer_hallucination
  ☆36Updated last year
• dina-lab3D / NanoNet
  ☆45Updated last year
• ohuelab / Solubility_AfDesign
  Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol
  ☆31Updated last year