Alternatives and similar repositories for topobuilder

Users that are interested in topobuilder are comparing it to the libraries listed below

• Rappsilber-Laboratory / AlphaLink2
  AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer
  ☆57Updated last month
• clami66 / AF_unmasked
  Source code and examples for AlphaFold Unmasked
  ☆71Updated last month
• labstructbioinf / localpdb
  Python package to manage protein structures and their annotations
  ☆43Updated last year
• swanss / FragFold
  Fragment binding prediction with ColabFold
  ☆35Updated 3 months ago
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆63Updated 5 months ago
• psipred / Merizo
  Fast and accurate protein domain segmentation using Invariant Point Attention
  ☆40Updated last month
• kWeissenow / EMBER3D
  Ultra-fast in-silico structure mutation
  ☆34Updated 3 months ago
• RosettaCommons / Rosetta-DL
  A bundle of deep-learning packages for biomolecular structure prediction and design contributed to the Rosetta Commons
  ☆35Updated 2 years ago
• KULL-Centre / _2024_cagiada_stability
  ☆70Updated 3 months ago
• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆45Updated 2 months ago
• adaptyvbio / competition_metrics
  Metrics for our protein design competitions.
  ☆33Updated 8 months ago
• AIforGreatGood / biotransfer
  Machine learning-driven antibody design
  ☆60Updated 2 years ago
• tommyhuangthu / EvoEF2
  Physical energy function for protein sequence design
  ☆31Updated 2 years ago
• JinyuanSun / DDGScan
  DDGScan: an integrated parallel workflow for the in silico point mutation scan of protein
  ☆48Updated last year
• bwicky / oligomer_hallucination
  ☆36Updated last year
• Andre-lab / evodock
  A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking
  ☆28Updated last week
• hesther / enzymemap
  Python package to atom map, correct and suggest enzymatic reactions
  ☆40Updated last year
• rohitsinghlab / raygun
  Template-based protein design with Raygun
  ☆70Updated last month
• jlparkI / AntPack
  Tools for annotation, processing and ML for antibody sequences
  ☆31Updated this week
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆50Updated 3 months ago
• patrickbryant1 / AFProfile
  Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
  ☆67Updated 10 months ago
• flyark / AFM-LIS
  Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)
  ☆57Updated 3 months ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆51Updated last month
• dina-lab3D / CombFold
  ☆84Updated 9 months ago
• data2code / afpdb
  Efficient manipulation of protein structures in Python
  ☆55Updated 8 months ago
• AbSciBio / igdesign
  ☆41Updated 6 months ago
• Kuhlman-Lab / alphafold3
  Kuhlman Lab Installation of AlphaFold3
  ☆27Updated 2 months ago
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆69Updated 3 weeks ago
• beckham-lab / EpHod
  Machine learning prediction of enzyme optimum pH
  ☆44Updated 2 months ago
• Kuhlman-Lab / evopro
  ☆81Updated last month