Parametric Building of de novo Functional Topologies
☆44Mar 11, 2022Updated 4 years ago
Alternatives and similar repositories for topobuilder
Users that are interested in topobuilder are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16Jun 22, 2020Updated 5 years ago
- Rosetta FunFolDes – a general framework for the computational design of functional proteins.☆21Apr 12, 2019Updated 7 years ago
- Using Rotamer Interaction Fields from RIFGen/Dock in python☆18May 2, 2021Updated 5 years ago
- ☆12May 16, 2020Updated 6 years ago
- Scripts and data to run AbDesign as described in Tools for protein science 2021☆14Nov 4, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- protein docking stuff☆52Apr 2, 2026Updated last month
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Oct 27, 2021Updated 4 years ago
- ☆18Mar 13, 2024Updated 2 years ago
- ☆20Oct 4, 2022Updated 3 years ago
- ☆28Dec 6, 2022Updated 3 years ago
- ☆30Apr 2, 2026Updated last month
- Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure☆53Mar 7, 2025Updated last year
- Code for our paper "Protein sequence design with a learned potential"☆83Sep 8, 2023Updated 2 years ago
- Python Toolbox For Rosetta Silent Files Processing☆16May 23, 2019Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Rifdock Library for Conformational Search☆173May 16, 2024Updated 2 years ago
- Code used in the manuscript for De Novo Design of Bioactive Protein Switches☆17May 16, 2019Updated 7 years ago
- Physical energy function for protein sequence design☆38May 6, 2023Updated 3 years ago
- ☆15Jun 11, 2021Updated 4 years ago
- ☆38Dec 21, 2023Updated 2 years ago
- Python Toolbox For Rosetta Silent Files Processing☆10Aug 2, 2021Updated 4 years ago
- Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox☆20Jan 30, 2019Updated 7 years ago
- Code for our paper "Protein sequence design with a learned potential"☆34Aug 5, 2021Updated 4 years ago
- GREMLIN is a method to learn a statistical model of a protein family that captures both conservation and co-evolution patterns in the fam…☆24Jul 3, 2016Updated 9 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- mirror of https://zhanglab.ccmb.med.umich.edu/EDTSurf/☆10Jun 20, 2023Updated 2 years ago
- ☆98Oct 14, 2025Updated 7 months ago
- De novo design of small molecule binding sites into proteins☆12Apr 14, 2021Updated 5 years ago
- Protein Sequence Evolutionary Information Language Model☆14Oct 5, 2023Updated 2 years ago
- ☆11Apr 21, 2023Updated 3 years ago
- Some scripts that I keep using over and over.☆21Jul 5, 2025Updated 10 months ago
- A variational autoencoder that directly generates the 3D coordinates of immunoglobulin protein backbones.☆32Jul 25, 2022Updated 3 years ago
- Tutorial files☆12Aug 7, 2024Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆74Jan 31, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Universal framework for physically based computational protein design☆37Aug 19, 2023Updated 2 years ago
- Conditioning diffusion models for scaffolding protein motifs. A repository for my master's dissertation.☆12Dec 10, 2024Updated last year
- A bundle of deep-learning packages for biomolecular structure prediction and design contributed to the Rosetta Commons☆38Oct 12, 2022Updated 3 years ago
- ☆52Jun 19, 2024Updated last year
- trRosetta for protein design☆185May 15, 2021Updated 5 years ago
- Code for designing binders to flexible peptides with AlphaFold2 Hallucination☆30Dec 21, 2023Updated 2 years ago
- ☆12Aug 26, 2024Updated last year