Alternatives and similar repositories for topobuilder

Users that are interested in topobuilder are comparing it to the libraries listed below

• bwicky / oligomer_hallucination
  ☆36Updated last year
• KULL-Centre / _2024_cagiada_stability
  ☆71Updated 8 months ago
• psipred / Merizo
  Fast and accurate protein domain segmentation using Invariant Point Attention
  ☆42Updated 6 months ago
• Andre-lab / evodock
  A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking
  ☆29Updated 5 months ago
• gwlilabmit / FragFold
  Fragment binding prediction with ColabFold
  ☆38Updated last month
• labstructbioinf / localpdb
  Python package to manage protein structures and their annotations
  ☆45Updated last year
• tommyhuangthu / EvoEF2
  Physical energy function for protein sequence design
  ☆34Updated 2 years ago
• MSDLLCpapers / promb
  Humanness of de-novo designed proteins
  ☆32Updated 6 months ago
• RosettaCommons / Rosetta-DL
  A bundle of deep-learning packages for biomolecular structure prediction and design contributed to the Rosetta Commons
  ☆36Updated 3 years ago
• clami66 / AF_unmasked
  Source code and examples for AlphaFold Unmasked
  ☆75Updated 2 weeks ago
• data2code / afpdb
  Efficient manipulation of protein structures in Python
  ☆60Updated 2 months ago
• flyark / AFM-LIS
  Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)…
  ☆62Updated last month
• Kuhlman-Lab / alphafold3
  Kuhlman Lab Installation of AlphaFold3
  ☆37Updated 2 months ago
• adaptyvbio / competition_metrics
  Metrics for our protein design competitions.
  ☆35Updated last year
• AbSciBio / igdesign
  ☆47Updated 11 months ago
• bene837 / af2seq
  ☆46Updated last year
• JinyuanSun / DDGScan
  DDGScan: an integrated parallel workflow for the in silico point mutation scan of protein
  ☆49Updated last year
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆82Updated 4 months ago
• RosettaCommons / AF2_peptide_hallucination
  Code for designing binders to flexible peptides with AlphaFold2 Hallucination
  ☆28Updated last year
• rohitsinghlab / raygun
  Template-based protein design with Raygun
  ☆76Updated last week
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆54Updated 3 months ago
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆72Updated last week
• Rappsilber-Laboratory / AlphaLink2
  AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer
  ☆58Updated 3 months ago
• dina-lab3D / CombFold
  ☆88Updated last year
• RosettaCommons / FvHallucinator
  ☆28Updated 3 years ago
• minmarg / gtalign_alpha
  GTalign, high-performance protein structure alignment, superposition and search
  ☆52Updated 3 months ago
• AIforGreatGood / biotransfer
  Machine learning-driven antibody design
  ☆62Updated 2 years ago
• patrickbryant1 / AFProfile
  Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
  ☆70Updated last year
• Protein-Engineering-Framework / PyPEF
  PyPEF – Pythonic Protein Engineering Framework
  ☆24Updated 2 months ago
• DeepRank / DeepRank-GNN-esm
  Graph Network for protein-protein interface including language model features
  ☆33Updated last year