Alternatives and similar repositories for alphabind

Users that are interested in alphabind are comparing it to the libraries listed below

• yehlincho / BoltzDesign1
  ☆112Updated this week
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆55Updated 2 weeks ago
• AbSciBio / igdesign
  ☆40Updated 4 months ago
• Graylab / FLAb
  Fitness landscapes for antibodies
  ☆71Updated 4 months ago
• richardshuai / fampnn
  Sidechain conditioning and modeling for full-atom protein sequence design
  ☆106Updated 3 months ago
• levinthal / Pallatom
  ☆94Updated this week
• Kuhlman-Lab / evopro
  ☆81Updated 2 months ago
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆42Updated 6 months ago
• programmablebio / pepmlm
  Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling
  ☆55Updated 10 months ago
• oxpig / Graphinity
  Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity
  ☆31Updated last month
• bcov77 / silent_tools
  A bunch of shell utilities for dealing the silent files
  ☆61Updated 2 weeks ago
• Wangchentong / Proteus
  Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.
  ☆75Updated 11 months ago
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆57Updated 6 months ago
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆59Updated 3 months ago
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆59Updated last year
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆113Updated 2 months ago
• zhanghaicang / carbonmatrix_public
  ☆112Updated last month
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆69Updated 4 months ago
• VarunUllanat / mint
  Learning the language of protein-protein interactions
  ☆73Updated this week
• WillHua127 / EnzymeFlow
  Official repository of EnzymeFlow
  ☆92Updated 5 months ago
• jeffreyruffolo / AntiBERTy
  Antibody-specific masked language model
  ☆55Updated last year
• ievapudz / TemStaPro
  TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.
  ☆56Updated last year
• evo-design / protein-dpo
  Aligning protein generative models with experimental fitness
  ☆96Updated 3 weeks ago
• Graylab / AlphaRED
  AlphaFold-initiated replica exchange protein docking
  ☆83Updated 2 weeks ago
• AstraZeneca / DiffAbXL
  The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…
  ☆71Updated this week
• chloechsu / combining-evolutionary-and-assay-labelled-data
  ☆62Updated 3 years ago
• oxpig / ABlooper
  Tool for modelling the CDRs of antibodies
  ☆48Updated 2 years ago
• ELELAB / RosettaDDGPrediction
  ☆65Updated 3 months ago
• sokrypton / RFdiffusion
  Code for running RFdiffusion
  ☆11Updated 2 months ago
• hugohrban / ProGen2-finetuning
  Finetuning ProGen2 protein language model for generation of protein sequences from selected protein families.
  ☆59Updated 4 months ago