Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure
☆52Mar 7, 2025Updated last year
Alternatives and similar repositories for RamaNet
Users that are interested in RamaNet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A bash script for an automated Rosetta Abinitio folding simulation on an HPC☆11Aug 29, 2020Updated 5 years ago
- ☆18Mar 13, 2024Updated 2 years ago
- Rosetta FunFolDes – a general framework for the computational design of functional proteins.☆21Apr 12, 2019Updated 6 years ago
- RosettaDesign using PyRosetta☆33Aug 22, 2019Updated 6 years ago
- Scripts and data to run AbDesign as described in Tools for protein science 2021☆14Nov 4, 2020Updated 5 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Guided Conditional Wasserstein GAN for De Novo Protein Design☆35Feb 23, 2021Updated 5 years ago
- ☆15Jun 22, 2020Updated 5 years ago
- Code for our paper "Protein sequence design with a learned potential"☆34Aug 5, 2021Updated 4 years ago
- Parametric Building of de novo Functional Topologies☆44Mar 11, 2022Updated 4 years ago
- De novo design of small molecule binding sites into proteins☆12Apr 14, 2021Updated 4 years ago
- Using Rotamer Interaction Fields from RIFGen/Dock in python☆17May 2, 2021Updated 4 years ago
- Deep convolutional neural networks for protein contact map prediction☆23Aug 5, 2019Updated 6 years ago
- Rotamer Interaction Field Python Libraries for Computational Protein Design☆13Feb 2, 2018Updated 8 years ago
- ☆20Oct 4, 2022Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Universal framework for physically based computational protein design☆37Aug 19, 2023Updated 2 years ago
- protein docking stuff☆52Sep 2, 2024Updated last year
- trRosetta for protein design☆184May 15, 2021Updated 4 years ago
- Modeling the effects of mutations in proteins using PyRosetta☆27Jan 26, 2018Updated 8 years ago
- Peptide Virtual Screening Pipeline☆14Jul 3, 2019Updated 6 years ago
- Deep ResNet-based protein contact prediction☆20Mar 30, 2020Updated 5 years ago
- 🔍 Fit3D - An application for template-based detection of small structural motifs in protein structures and macromolecular structure data…☆11Oct 16, 2018Updated 7 years ago
- A Bio2BEL package for DrugBank (https://www.drugbank.ca)☆10Dec 14, 2020Updated 5 years ago
- Code for our paper "Protein sequence design with a learned potential"☆82Sep 8, 2023Updated 2 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆11May 16, 2020Updated 5 years ago
- Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will…☆99Jan 26, 2022Updated 4 years ago
- Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies☆94Jul 13, 2023Updated 2 years ago
- Biobb (BioExcel building blocks) packages are Python building blocks that create new layer of compatibility and interoperability over pop…☆65Dec 22, 2025Updated 3 months ago
- Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/…☆74Aug 11, 2023Updated 2 years ago
- ProteinFeatureAnalyzer extracts, analyzes and visualizes features from protein structures.☆14Mar 14, 2020Updated 6 years ago
- bakerlab pymol scripts☆26Feb 6, 2020Updated 6 years ago
- ☆11Aug 5, 2020Updated 5 years ago
- Fraction of Common Contacts Clustering Algorithm for Protein Structures☆27Aug 12, 2021Updated 4 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆12Jun 16, 2023Updated 2 years ago
- A toolkit for predicting the binding mode of small molecules interacting with proteins based on interfacial rigidification, as assessed b…☆10Nov 22, 2016Updated 9 years ago
- Deep Generative Models for Drug Combination (Graph Set) Generation given Hierarchical Disease Network Embedding☆31Mar 25, 2023Updated 3 years ago
- ☆29Jul 10, 2020Updated 5 years ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆33Aug 10, 2023Updated 2 years ago
- Protein design and variant prediction using autoregressive generative models☆119Jan 23, 2024Updated 2 years ago
- Collected scripts for Pymol☆10Mar 18, 2015Updated 11 years ago