Alternatives and similar repositories for HOT-or-not-examining-the-basis-of-high-occupancy-target-regions

Users that are interested in HOT-or-not-examining-the-basis-of-high-occupancy-target-regions are comparing it to the libraries listed below

• nuno-agostinho / psichomics
  Interactive R package to quantify, analyse and visualise alternative splicing
  ☆37Updated this week
• mani2012 / BatchQC
  Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.
  ☆35Updated 2 years ago
• egaffo / CirComPara
  A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data
  ☆16Updated 5 years ago
• Kuanhao-Chao / RNASeqR
  📊 An R package of RNA-seq workflow
  ☆15Updated 3 years ago
• PhanstielLab / bedtoolsr
  R package wrapping bedtools
  ☆44Updated 7 months ago
• kauralasoo / wiggleplotr
  A small R package to make sequencing read coverage plots in R.
  ☆39Updated 2 weeks ago
• GreenleafLab / NucleoATACR
  R package for reading in & working with NucleoATAC outputs
  ☆26Updated 7 years ago
• Bioconductor / BiocWorkshops2019
  The official repository of the Bioconductor 2019 Conference Workshops
  ☆24Updated 2 years ago
• Simon-Coetzee / motifBreakR
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆29Updated last year
• crazyhottommy / scCustomize
  Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆16Updated 3 years ago
• jtleek / sva-devel
  ☆29Updated last year
• markrobinsonuzh / diff_splice_paper
  Code for differential splicing comparison paper (Soneson, Matthes, et al.)
  ☆20Updated 9 years ago
• itsvenu / ALPS
  AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project
  ☆16Updated 2 years ago
• yasinkaymaz / singleCellRNAseq_workshop
  Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.
  ☆16Updated 6 years ago
• ge11232002 / TFBSTools
  Software Package for Transcription Factor Binding Site (TFBS) Analysis
  ☆30Updated 7 months ago
• slowkow / homerkit
  Read HOMER motif analysis output in R.
  ☆17Updated 7 years ago
• stephenturner / msigdf
  Molecular Signatures Database (MSigDB) in a data frame
  ☆16Updated 6 years ago
• HLee-Six / colon_microbiopsies
  Code and files accompanying article "The landscape of somatic mutation in normal colorectal epithelial cells"
  ☆11Updated 4 years ago
• Danko-Lab / rtfbs_db
  Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.
  ☆23Updated 6 years ago
• smithlabcode / riborex
  Riborex: Fast and flexible identification of differential translation from Ribo-seq data
  ☆10Updated 4 years ago
• bartongroup / RATS
  Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.
  ☆34Updated 3 years ago
• d3b-center / annoFuse
  Filter and prioritize fusion calls
  ☆20Updated last year
• crazyhottommy / single-cell-DNAseq-notes
  ☆16Updated 3 years ago
• CompEpigen / methrix
  An R for fast and flexible DNA methylation analysis
  ☆34Updated 3 weeks ago
• khuranalab / CompositeDriver
  Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers
  ☆15Updated 7 years ago
• lpantano / DEGreport
  Create a cromphensive report of DEG list coming from any analysis of RNAseq data
  ☆26Updated 2 weeks ago
• pachterlab / aggregationDE
  Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter
  ☆19Updated 7 years ago
• mrcuizhe / interacCircos
  An R Package based on JavaScript libraries for Visualization of Interactive Circos Plot
  ☆28Updated 3 years ago
• Niinleslie / MesKit
  A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations
  ☆35Updated 3 years ago
• flemingtonlab / SpliceTools
  ☆17Updated last year