Alternatives and similar repositories for HOT-or-not-examining-the-basis-of-high-occupancy-target-regions:

Users that are interested in HOT-or-not-examining-the-basis-of-high-occupancy-target-regions are comparing it to the libraries listed below

• genemine / iread
  iread
  ☆23Updated 3 years ago
• crazyhottommy / scCustomize
  Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆16Updated 3 years ago
• GreenleafLab / NucleoATACR
  R package for reading in & working with NucleoATAC outputs
  ☆26Updated 6 years ago
• khuranalab / CompositeDriver
  Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers
  ☆15Updated 6 years ago
• Kuanhao-Chao / RNASeqR
  📊 An R package of RNA-seq workflow
  ☆16Updated 2 years ago
• egaffo / CirComPara
  A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data
  ☆14Updated 4 years ago
• djhn75 / RNAEditor
  ☆14Updated 2 years ago
• aslihankarabacak / FootprintPipeline
  Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets
  ☆12Updated 6 years ago
• crazyhottommy / single-cell-DNAseq-notes
  ☆15Updated 2 years ago
• smlmbrt / SimilarityRegression
  Predicting TF sequence-specificity similarity with weighted alignments
  ☆12Updated 5 years ago
• nuno-agostinho / psichomics
  Interactive R package to quantify, analyse and visualise alternative splicing
  ☆36Updated 2 weeks ago
• mdozmorov / RNA-seq
  RNA-seq analysis scripts
  ☆15Updated 2 years ago
• kauralasoo / wiggleplotr
  A small R package to make sequencing read coverage plots in R.
  ☆37Updated 2 years ago
• lagelab / quack
  Machine learning algorithm to predict biological pathway relationships based on functional genomics networks
  ☆19Updated 6 years ago
• Simon-Coetzee / motifBreakR
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆28Updated 5 months ago
• itsvenu / ALPS
  AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project
  ☆16Updated last year
• comprna / ORQAS
  ORF Quantification pipeline for Alternative Splicing
  ☆16Updated 3 years ago
• d3b-center / annoFuse
  Filter and prioritize fusion calls
  ☆20Updated 3 months ago
• ParkerLab / atactk
  A toolkit for working with ATAC-seq data.
  ☆24Updated 7 months ago
• pachterlab / aggregationDE
  Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter
  ☆19Updated 6 years ago
• TRON-Bioinformatics / splice2neo
  R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes
  ☆13Updated 2 months ago
• yuchaojiang / SCALE
  Allele-Specific Expression by Single-Cell RNA Sequencing
  ☆28Updated 4 years ago
• SimoneTiberi / BANDITS
  BANDITS: Bayesian ANalysis of DIfferenTial Splicing
  ☆17Updated last year
• flemingtonlab / SpliceTools
  ☆18Updated 5 months ago
• Bioconductor / BiocWorkshops2019
  The official repository of the Bioconductor 2019 Conference Workshops
  ☆25Updated last year
• eudoraleer / scasa
  SCASA: Single cell transcript quantification tool
  ☆19Updated last year
• PhanstielLab / bedtoolsr
  R package wrapping bedtools
  ☆38Updated 4 months ago
• Danko-Lab / rtfbs_db
  Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.
  ☆22Updated 6 years ago
• Danko-Lab / tutorials
  Tutorials covering various topics in genomic data analysis.
  ☆16Updated 6 years ago
• friedue / course_RNA-seq2017
  ☆12Updated 7 years ago