francescojm / CRISPRcleanRLinks
Unsupervised correction of gene independent cell responses to CRISPR-cas9
☆50Updated 2 years ago
Alternatives and similar repositories for CRISPRcleanR
Users that are interested in CRISPRcleanR are comparing it to the libraries listed below
Sorting:
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆23Updated 6 years ago
- processes GoT amplicon data and generates a table of metrics☆30Updated 3 years ago
- Epimap processing and analysis code repository☆33Updated 2 years ago
- Identify and correct invalid gene symbols☆58Updated 8 months ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 7 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆42Updated last year
- Explore and download data from the recount3 project☆36Updated 2 months ago
- collection of notebooks with different cytoscape workflows☆50Updated 2 years ago
- R package with motifs for use with chromVAR☆28Updated 7 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆87Updated 4 months ago
- R package for analysing proteomics data☆49Updated 2 years ago
- Integrative pathway enrichment analysis of multivariate omics data☆113Updated this week
- BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data☆42Updated 10 months ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- R package containing useful functions for mutational signature analysis☆82Updated last week
- ☆59Updated 10 months ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- ☆58Updated 4 years ago
- REVOLVER - Repeated Evolution in Cancer☆65Updated 2 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated 9 months ago
- An R interface to the MEME Suite☆50Updated last month
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 7 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆56Updated last year
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆48Updated 4 months ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated 2 years ago
- Human transcription factor target genes from 6 databases in convenient R format.☆86Updated 6 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 6 years ago
- 🧬 Gene analysis toolkit based on R☆57Updated 6 months ago
- epigenome analysis to rank transcription factors☆30Updated 2 years ago