Unsupervised correction of gene independent cell responses to CRISPR-cas9
☆55Apr 28, 2023Updated 3 years ago
Alternatives and similar repositories for CRISPRcleanR
Users that are interested in CRISPRcleanR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R implementation of the BAGEL method to call for gene essentiality significance☆11May 1, 2018Updated 8 years ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆24Mar 29, 2019Updated 7 years ago
- Modeling of time series data for CRISPR KO experiments☆42Oct 1, 2026Updated 3 weeks ago
- BAGEL software☆28Jan 30, 2024Updated 2 years ago
- DRUGZ software☆24Aug 9, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- analysis of single cell RNA sequencing data and cell type annotation☆19Jan 2, 2020Updated 6 years ago
- An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)☆16Jul 3, 2012Updated 14 years ago
- Molecular Signatures Database (MSigDB) in a data frame☆15Dec 3, 2018Updated 7 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆30Aug 30, 2019Updated 7 years ago
- Python module to analyse CRISPR-based libraries☆16Apr 1, 2021Updated 5 years ago
- Tools for assessing clustering robustness☆34Sep 27, 2026Updated last month
- Computational correction of copy-number effect in CRISPR-Cas9 essentiality screens☆31Mar 21, 2019Updated 7 years ago
- cDriver R package for finding candidate driver genes in cancers☆18Jan 18, 2018Updated 8 years ago
- Visualization tool for integrating single cell phylogeny with genomic content to clearly display evolutionary progression and tumour hete…☆11Sep 12, 2017Updated 9 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Pathway-Level Single-Cell Functional Profiling of Individual Patient Samples☆11Aug 6, 2025Updated last year
- A suite for the analysis of CLIP-Seq datasets.☆12Jan 31, 2022Updated 4 years ago
- Explore and share your scRNAseq clustering results☆53Sep 6, 2023Updated 3 years ago
- GRETTA (Genetic inteRaction and EssenTiality neTwork mApper): An R package for mapping genetic interaction and essentiality networks☆12Sep 24, 2026Updated last month
- Create timecourse "fish plots" that show changes in the clonal architecture of tumors☆171Jan 28, 2026Updated 9 months ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆38Jul 5, 2021Updated 5 years ago
- Shiny app for visualization, exploration of mouse brain single cell gene expression☆12Oct 31, 2018Updated 7 years ago
- Analysing Capture Seq Count Data☆14Jun 11, 2018Updated 8 years ago
- Curated list of TCGA resources☆61Nov 10, 2017Updated 8 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- hyb: a bioinformatics pipeline for the analysis of CLASH (crosslinking, ligation and sequencing of hybrids) data☆14Jul 12, 2024Updated 2 years ago
- R package for testing and visualizing gene list overlaps☆21Aug 22, 2016Updated 10 years ago
- Inference of gene dependency from RNAi screening datasets.☆19Apr 9, 2020Updated 6 years ago
- Deconvolve individual immune cell types from cancer data☆10Apr 29, 2017Updated 9 years ago
- R package that allows easily performing a complete Hi-C data analysis through a Graphical User Interface☆16Jan 26, 2021Updated 5 years ago
- scType goes spatial: ScType enables fast and accurate cell type identification from spatial transcriptomics data☆12Jul 11, 2024Updated 2 years ago
- ☆19Mar 8, 2023Updated 3 years ago
- ☆75Aug 19, 2023Updated 3 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆28Jan 25, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Reactome Pathway Analysis☆46Sep 26, 2026Updated last month
- Integrative analysis pipeline for pooled CRISPR functional genetic screens☆37Jun 8, 2026Updated 4 months ago
- Tutorials for the crisprVerse☆16Feb 10, 2025Updated last year
- R package to do enrichment analysis for neoantigens☆13Feb 21, 2022Updated 4 years ago
- An R package for inferring the subclonal architecture of tumors☆125Mar 15, 2026Updated 7 months ago
- CRISPRAnalyzeR: interactive analysis, annotation and documentation of pooled CRISPR screens☆80May 21, 2020Updated 6 years ago
- Unify Dimensionality Reduction Results☆15Oct 13, 2026Updated 2 weeks ago