francescojm / CRISPRcleanRLinks
Unsupervised correction of gene independent cell responses to CRISPR-cas9
☆50Updated 2 years ago
Alternatives and similar repositories for CRISPRcleanR
Users that are interested in CRISPRcleanR are comparing it to the libraries listed below
Sorting:
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 7 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 7 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated 2 years ago
- ☆47Updated 5 months ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- collection of notebooks with different cytoscape workflows☆50Updated 2 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- Notes on ChIP-seq and other-seq-related tools☆26Updated 5 months ago
- Epimap processing and analysis code repository☆33Updated 2 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆42Updated last year
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated 3 months ago
- Estimation of Promoter Activity from RNA-Seq data☆53Updated 3 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated 2 years ago
- epigenome analysis to rank transcription factors☆30Updated 2 years ago
- ☆34Updated 6 years ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆23Updated 6 years ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆50Updated 6 years ago
- ☆59Updated 9 months ago
- An R interface to the MEME Suite☆50Updated last week
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- CAusal Reasoning for Network Identification with integer VALue programming in R☆59Updated last year
- A continually expanding collection of RNA-seq tools☆50Updated 8 months ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated 8 months ago
- model-based understanding of single-cell CRISPR screening☆23Updated 6 months ago
- R package containing useful functions for mutational signature analysis☆82Updated this week
- From RNA-seq raw reads to enriched pathways by DEGs☆32Updated last year
- ☆55Updated 4 months ago
- ☆64Updated last year
- Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes☆36Updated 11 months ago
- ☆48Updated 2 years ago