stephaniehicks / bioconductorNotesLinks
My notes/usage examples for various Bioconductor packages
☆15Updated 8 years ago
Alternatives and similar repositories for bioconductorNotes
Users that are interested in bioconductorNotes are comparing it to the libraries listed below
Sorting:
- Bioconductor package for management of multi-assay data☆72Updated 3 weeks ago
- An online companion to the OSCA manuscript demonstrating Bioconductor resources and workflows for single-cell RNA-seq analysis.☆37Updated 2 years ago
- Functional enrichment analysis of high-throughput omics data☆20Updated 8 months ago
- Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail☆78Updated 4 months ago
- The START App: R Shiny Transcriptome Analysis Resource Tool☆89Updated 4 years ago
- Clone of the Bioconductor repository for the basilisk package.☆28Updated 3 weeks ago
- Explore design matrices interactively with R/Shiny☆37Updated 5 months ago
- 2018 Bioconductor Workshops☆76Updated 6 years ago
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Updated 9 months ago
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆47Updated 5 years ago
- Quantify and interpret divers of variation in multilevel gene expression experiments☆66Updated 3 weeks ago
- The official repository of the Bioconductor 2019 Conference Workshops☆24Updated 2 years ago
- Topics In Data Science and Bioinformatics☆79Updated last year
- Brings SingleCellExperiment objects to the tidyverse☆36Updated 2 months ago
- An R Package for Geneset Enrichment Workflows☆76Updated 2 weeks ago
- Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap☆26Updated 4 years ago
- Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCe…☆74Updated 2 months ago
- Differential Correlation across Ranked Samples☆12Updated 2 years ago
- Clone of the Bioconductor repository for the scater package.☆97Updated 6 months ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆43Updated last month
- An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.…☆109Updated 2 weeks ago
- Linseed: LINear Subspace identification for gene Expresion Deconvolution☆31Updated 3 weeks ago
- Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…☆106Updated 2 years ago
- MSigDB gene sets for multiple organisms in a tidy data format☆82Updated last month
- Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment☆33Updated last month
- Course material for introductory R / Bioconductor courses☆44Updated 2 years ago
- An introduction to matrix factorization and PCA and SVD.☆41Updated last year
- Download, integration and visualizations of the variety & volume of TCGA data.☆51Updated 2 years ago
- R package for benchmarking single cell analysis methods☆32Updated last year
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago