hight performance & useful tools for working with fastq and bam files
☆28Jan 25, 2019Updated 7 years ago
Alternatives and similar repositories for HighPerformanceNGS
Users that are interested in HighPerformanceNGS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Extremely fast BAM depth calculation for WGS, exome, or targeted sequencing☆13Jan 25, 2019Updated 7 years ago
- A false-positive filter for variants called from massively parallel sequencing☆29May 30, 2017Updated 8 years ago
- Just a python fasta/q parser based on kseq.h☆14Jul 13, 2020Updated 5 years ago
- Molecular Signatures Database (MSigDB) in a data frame☆16Dec 3, 2018Updated 7 years ago
- finding conserved regions in highly diverse genomes☆16Jun 1, 2025Updated 10 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Jan 18, 2019Updated 7 years ago
- ☆11Apr 3, 2023Updated 3 years ago
- a lightweight bam file depth statistical tool☆161Sep 13, 2024Updated last year
- ☆26Aug 10, 2021Updated 4 years ago
- Interactive table from gemini output☆10Mar 5, 2019Updated 7 years ago
- ☆32Dec 16, 2022Updated 3 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Feb 10, 2026Updated 2 months ago
- Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.☆22Feb 10, 2019Updated 7 years ago
- memory mapped multimap, multiset, and implicit interval tree based on an in-place parallel sort☆27Jan 25, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A tutorial for learning de novo assembly☆33Dec 8, 2011Updated 14 years ago
- ziglang + htslib☆21Oct 31, 2021Updated 4 years ago
- ☆14Jul 27, 2019Updated 6 years ago
- Add multiple thread function for genome comparison☆16Sep 29, 2021Updated 4 years ago
- Official code repository for JAX-CNV☆14Jan 16, 2020Updated 6 years ago
- A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data☆13Mar 30, 2026Updated 2 weeks ago
- Read HOMER motif analysis output in R.☆17Mar 1, 2018Updated 8 years ago
- A k-mer frequency statistics software☆15Nov 19, 2021Updated 4 years ago
- ☆13Jan 23, 2020Updated 6 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- MicrOSAtellite Instability Classifier☆15Dec 12, 2017Updated 8 years ago
- Work supporting the comparison of SnpEff and VEP effect prediction and HGVS identifiers☆11Mar 15, 2017Updated 9 years ago
- Human mitochondrial variants annotation using HmtVar.☆18Oct 16, 2023Updated 2 years ago
- BAMixChecker: A fast and efficient tool for sample matching checkup☆16Jun 12, 2022Updated 3 years ago
- THIS IS THE OLD REPO: Use this one instead: https://github.com/monarch-initiative/mondo-build☆17Feb 5, 2021Updated 5 years ago
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- Call regions of homozygosity and make tentative UPD calls☆12Jun 27, 2025Updated 9 months ago
- Extremely fast Variant Call Format annotation☆11Dec 25, 2024Updated last year
- MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes☆20Mar 21, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Seave is a web platform that enables genetic variants to be easily filtered and annotated with in silico pathogenicity prediction scores …☆16Aug 9, 2018Updated 7 years ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆20Feb 13, 2026Updated 2 months ago
- MrMosaic (Genomic Mosaic Structural Variant Caller)☆15Jul 21, 2017Updated 8 years ago
- CLIP Tool Kit (CTK)☆21Apr 28, 2024Updated last year
- ☆16Oct 9, 2024Updated last year
- BWA-MEME: Faster BWA-MEM2 using learned-index☆136Mar 25, 2026Updated 3 weeks ago
- Identify cell types and pathways affected by genetic risk loci.☆36Feb 29, 2024Updated 2 years ago