Alternatives and similar repositories for peppr

Users that are interested in peppr are comparing it to the libraries listed below

• tiwarylab / af2rave
  Boltzmann-ranked alternative protein conformations from reduced-MSA AlphaFold2
  ☆57Updated 3 weeks ago
• iambic-therapeutics / np-bench
  A benchmark for 3D biomolecular structure prediction models
  ☆64Updated 3 months ago
• tiwarylab / alphafold2rave
  ☆68Updated last year
• iriziotis / Uniprot-PDB-mapper
  Quick mapping of Uniprot sequences to PDB structures
  ☆33Updated 5 months ago
• PDBeurope / ccdutils
  A set of python tools to deal with PDB chemical components definitions for small molecules, taken from the wwPDB Chemical Component Dicti…
  ☆65Updated 2 weeks ago
• sokrypton / af2bind
  ☆49Updated last month
• patrickbryant1 / RareFold
  Structure prediction and design of proteins with noncanonical amino acids
  ☆88Updated last month
• aqlaboratory / QuickBind
  A Light-Weight And Interpretable Molecular Docking Model
  ☆22Updated 10 months ago
• Graylab / DFMDock
  DFMDock (Denoising Force Matching Dock), a diffusion model that unifies sampling and ranking within a single framework.
  ☆47Updated last month
• pstansfeld / MemProtMD
  ☆45Updated 3 months ago
• KULL-Centre / _2023_Tesei_IDRome
  ☆45Updated 4 months ago
• ShintaroMinami / PyDSSP
  A simplified implementation of DSSP algorithm for PyTorch and NumPy
  ☆91Updated 2 months ago
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆43Updated 3 weeks ago
• matteoferla / rdkit_to_params
  Create or modify Rosetta params files (topology files) from scratch, RDKit mols or another params file
  ☆34Updated last month
• uw-ipd / tmol
  TMol
  ☆41Updated this week
• ohuelab / ColabDesign-cyclic-binder
  ☆33Updated 2 years ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆51Updated 3 months ago
• svats73 / mdml
  mdml: Deep Learning for Molecular Simulations
  ☆47Updated 3 months ago
• inductive-bio / strong-docking-baseline
  Code accompanying our blog post on a stronger docking baseline for Alpha Fold 3 docking
  ☆21Updated last year
• vsomnath / flexdock
  Composing Unbalanced Flows for Flexible Docking and Relaxation (ICLR 2025)
  ☆48Updated 2 months ago
• pritampanda15 / PandaMap
  Ligand-Protein Interaction Mapping
  ☆60Updated 4 months ago
• tiwarylab / GrASP
  Graph Attention Site Prediction (GrASP): Identifying Druggable Binding Sites Using Graph Neural Networks with Attention
  ☆53Updated 2 months ago
• ibmm-unibe-ch / TemBERTure
  ☆29Updated last year
• bunzela / AIzymes
  ☆53Updated last month
• molecularmodelinglab / plantain
  Fast and accurate molecular docking with an AI pose scoring function
  ☆41Updated last year
• Croydon-Brixton / pymol-remote
  Send data to and from pymol from a remote server (e.g. a cluster running deep learning workflows)
  ☆33Updated 6 months ago
• GMdSilva / gms_natcomms_1705932980_data
  Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2
  ☆39Updated last year
• THGLab / HiQBind
  Workflow to clean up and fix structural problems in protein-ligand binding datasets
  ☆52Updated 3 months ago
• PDBeurope / arpeggio
  Calculation of interatomic interactions in molecular structures
  ☆105Updated 11 months ago
• anton-bushuiev / PPIformer
  Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)
  ☆46Updated 7 months ago