It's a package for evaluation of predicted poses, right?
☆76Mar 27, 2026Updated last month
Alternatives and similar repositories for peppr
Users that are interested in peppr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PINDER: The Protein INteraction Dataset and Evaluation Resource☆154Nov 15, 2024Updated last year
- Send data to and from pymol from a remote server (e.g. a cluster running deep learning workflows)☆37Feb 17, 2025Updated last year
- Protein Ligand INteraction Dataset and Evaluation Resource☆285Apr 28, 2026Updated last week
- Chroma Protein Diffusion Model☆12Nov 16, 2023Updated 2 years ago
- Code for deep learning guided design of dynamic proteins☆33Jul 16, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Scripts to run AlphaFold3, Boltz-2, Chai-1, OpenFold3, Protenix & RF3 with MMseqs2 MSAs and custom templates.☆106Apr 28, 2026Updated last week
- A benchmark dataset for protein-ligand co-folding prediction☆58Aug 13, 2025Updated 8 months ago
- Code and notebook for our paper "Assessing interaction recovery of predicted protein-ligand poses"☆22Oct 2, 2024Updated last year
- Profluent-E1 family of Protein Encoder Models☆112Mar 11, 2026Updated last month
- Protein Structure Archiver☆14Sep 10, 2025Updated 7 months ago
- ☆21Updated this week
- Antibody structure prediction☆37Dec 16, 2025Updated 4 months ago
- TMol☆74Updated this week
- A high performance drop-in replacement for Biotite's PDBFile.☆42May 27, 2025Updated 11 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Structure-conditioned masked language modeling for protein sequence design☆74Jan 31, 2024Updated 2 years ago
- Clusters protein chains based on CA distance difference☆17Mar 18, 2026Updated last month
- Sidechain conditioning and modeling for full-atom protein sequence design☆138Nov 11, 2025Updated 5 months ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆72Apr 13, 2026Updated 3 weeks ago
- Repo for the publication titled: "Key Interaction Networks: Identifying Evolutionarily Conserved Non-Covalent Interaction Networks Across…☆18Nov 14, 2023Updated 2 years ago
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆123May 27, 2025Updated 11 months ago
- Rank binders by structure modeling☆16Apr 10, 2026Updated 3 weeks ago
- Multi-domain Distribution Learning for De Novo Drug Design☆158Jan 26, 2026Updated 3 months ago
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆39Jul 25, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Protein structure diffusion model for unconditional protein generation and motif scaffolding☆191Jun 24, 2024Updated last year
- Lightweight induced fit docking☆22May 22, 2023Updated 2 years ago
- ☆118Dec 7, 2022Updated 3 years ago
- protein backbone refinement☆15Sep 12, 2024Updated last year
- Cython implementation of PDB -> DataFrame parsing☆34Dec 23, 2025Updated 4 months ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆89Jun 23, 2024Updated last year
- Plausibility checks for generated molecule poses.☆376Mar 7, 2026Updated last month
- Feynman-Kac steering for controllable protein diffusion☆35Jan 14, 2026Updated 3 months ago
- A bridge between Biotite and OpenMM☆15Mar 16, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Learning Universal Representations of Intermolecular Interactions with ATOMICA☆215Apr 13, 2026Updated 3 weeks ago
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆151Apr 16, 2025Updated last year
- Lbster: Language models for Biological Sequence Transformation and Evolutionary Representation☆162Apr 10, 2026Updated 3 weeks ago
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆277Feb 14, 2024Updated 2 years ago
- JAX translation of boltz☆27Aug 4, 2025Updated 9 months ago
- Compressing protein structures effectively with torsion angles☆193Feb 10, 2026Updated 2 months ago
- This repo is deprecated. I move the work to support molstar in nglview: https://github.com/nglviewer/nglview☆12Dec 3, 2024Updated last year