Alternatives and similar repositories for peppr:

Users that are interested in peppr are comparing it to the libraries listed below

• tiwarylab / af2rave
  Boltzmann-ranked alternative protein conformations from reduced-MSA AlphaFold2
  ☆46Updated last week
• iambic-therapeutics / np-bench
  A benchmark for 3D biomolecular structure prediction models
  ☆56Updated 3 months ago
• tiwarylab / alphafold2rave
  ☆68Updated 9 months ago
• iriziotis / Uniprot-PDB-mapper
  Quick mapping of Uniprot sequences to PDB structures
  ☆27Updated last week
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆32Updated 3 weeks ago
• KULL-Centre / DEERpredict
  Software for the prediction of DEER and PRE data from conformational ensembles.
  ☆12Updated 7 months ago
• sokrypton / af2bind
  ☆49Updated 3 weeks ago
• uw-ipd / tmol
  TMol
  ☆32Updated 3 weeks ago
• plinder-org / runs-n-poses
  A benchmark dataset for protein-ligand co-folding prediction
  ☆17Updated 2 months ago
• huhlim / alphafold-multistate
  ☆34Updated last year
• ohuelab / ColabDesign-cyclic-binder
  ☆31Updated last year
• tiwarylab / GrASP
  Graph Attention Site Prediction (GrASP): Identifying Druggable Binding Sites Using Graph Neural Networks with Attention
  ☆50Updated 2 weeks ago
• forlilab / Ringtail
  Package for storage and analysis of virtual screenings run with AutoDock-GPU and AutoDock Vina
  ☆47Updated 2 weeks ago
• GMdSilva / gms_natcomms_1705932980_data
  Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2
  ☆39Updated 10 months ago
• THGLab / HiQBind
  Workflow to clean up and fix structural problems in protein-ligand binding datasets
  ☆35Updated last week
• pstansfeld / MemProtMD
  ☆38Updated last week
• mjendrusch / salad
  protein structure generation with sparse all-atom denoising models
  ☆30Updated 2 months ago
• Hoecker-Lab / pocketoptimizer
  Binding pocket optimization based on force fields and docking scoring functions
  ☆31Updated 3 weeks ago
• ibmm-unibe-ch / TemBERTure
  ☆25Updated 7 months ago
• PDBeurope / arpeggio
  Calculation of interatomic interactions in molecular structures
  ☆91Updated 7 months ago
• iamysk / AFsample2
  Modelling protein conformational landscape with Alphafold
  ☆46Updated 3 weeks ago
• biotite-dev / hydride
  Adding hydrogens to molecular models
  ☆40Updated 5 months ago
• DrugBud-Suite / DockM8
  All in one Structure-Based Virtual Screening workflow based on the concept of consensus docking.
  ☆41Updated 2 months ago
• atommoyer / stapler
  A Motif Hash Based Method for Matching Crosslinkers into Peptides and Proteins
  ☆18Updated last year
• kamerlinlab / KIF
  KIF - Key Interactions Finder. A python package to identify the key molecular interactions that regulate any conformational change.
  ☆29Updated 10 months ago
• kamerlinlab / KIN
  Repo for the publication titled: "Key Interaction Networks: Identifying Evolutionarily Conserved Non-Covalent Interaction Networks Across…
  ☆15Updated last year
• aethertier / secstructartist
  A python module to plot secondary structure schemes
  ☆25Updated last year
• matteoferla / rdkit_to_params
  Create or modify Rosetta params files (topology files) from scratch, RDKit mols or another params file
  ☆32Updated last year
• richardshuai / fampnn
  Sidechain conditioning and modeling for full-atom protein sequence design
  ☆88Updated last month
• liedllab / surface_analyses
  Scores for Hydrophobicity and Charges based on SASAs
  ☆31Updated 3 weeks ago