Infers a phylogenetic tree from protein structures
☆112Aug 20, 2026Updated 2 months ago
Alternatives and similar repositories for foldtree
Users that are interested in foldtree are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- foldtree2☆15Oct 20, 2026Updated last week
- ☆10Apr 12, 2023Updated 3 years ago
- Multiple Protein Structure Alignment at Scale with FoldMason☆283May 11, 2026Updated 5 months ago
- Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. struc…☆25Oct 23, 2026Updated last week
- Foldseek enables fast and sensitive comparisons of large structure sets.☆1,322Sep 9, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Gene tree - species tree reconciliation from gene tree distributions☆44Updated this week
- ☆18Feb 16, 2026Updated 8 months ago
- Compressing protein structures effectively with torsion angles☆199Sep 7, 2026Updated last month
- Bilingual Language Model for Protein Sequence and Structure☆326Mar 6, 2026Updated 7 months ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆102Mar 12, 2026Updated 7 months ago
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆14Oct 21, 2021Updated 5 years ago
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆26Nov 9, 2022Updated 3 years ago
- Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"☆13Apr 2, 2023Updated 3 years ago
- ☆21Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Protein structure alignment and search algorithm☆102Sep 9, 2026Updated last month
- PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.☆24Oct 13, 2023Updated 3 years ago
- A package for making tree-based visualizations for embedding vectors☆10Feb 6, 2023Updated 3 years ago
- "Rewriting protein alphabets with language models"☆26Updated this week
- ☆91Nov 18, 2025Updated 11 months ago
- Fast implementation of KofamScan optimized for high-memory systems using PyHMMER☆23Aug 17, 2026Updated 2 months ago
- ☆16Feb 13, 2026Updated 8 months ago
- Scoring alignments by embedding vector similarity☆15Jul 17, 2026Updated 3 months ago
- Local homology search powered by ESM-2 language model, foldseek, hhsuite, and hmmer.☆18Jan 14, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Phage Annotation using Protein Structures☆178Oct 13, 2026Updated 2 weeks ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆73Aug 27, 2026Updated 2 months ago
- STRIDE: Species Tree Root Inference from Gene Duplication Events☆10Aug 28, 2018Updated 8 years ago
- STAG: Species Tree from All Genes☆37Dec 10, 2018Updated 7 years ago
- Fast indexing and search of discontinuous motifs in protein structures☆221Oct 15, 2026Updated 2 weeks ago
- A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima☆67Sep 30, 2020Updated 6 years ago
- FUGAsseM: Function predictor of Uncharacterized Gene products by Assessing high-dimensional community data in Microbiomes☆21Dec 26, 2025Updated 10 months ago
- Reaction Analysis through Imaging of Chemical Units☆17Dec 5, 2025Updated 10 months ago
- Source code and examples for AlphaFold Unmasked☆79Jun 23, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆13Jun 7, 2025Updated last year
- ML toolset for creating TED: The Encyclopedia of Domains☆29May 29, 2025Updated last year
- ☆32Updated this week
- ☆18Aug 28, 2023Updated 3 years ago
- Possvm: find clusters of orthologs in phylogenies using species overlap & MCL☆19Jul 19, 2024Updated 2 years ago
- Identifies relevant ligands in the PDB☆10Oct 24, 2026Updated last week
- Fast protein domain structure embedding+search tool☆31Sep 21, 2025Updated last year