fauman / EGEA

Related projects ⓘ

Alternatives and complementary repositories for EGEA

• opentargets / genetics-sumstat-harmoniser
  Harmonise GWAS summary statistics against a reference VCF
  ☆40Updated 3 years ago
• francois-a / fastqtl
  Enhanced version of the FastQTL QTL mapper
  ☆56Updated last year
• clagiamba / moloc
  ☆32Updated 3 years ago
• eQTL-Catalogue / eQTL-Catalogue-resources
  ☆42Updated last week
• rivas-lab / public-resources
  Repository for resources we'd like to share with the community.
  ☆24Updated 2 years ago
• leelabsg / SKAT
  Sequence kernel association test (SKAT)
  ☆42Updated 11 months ago
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆47Updated this week
• atgu / ukbb_pan_ancestry
  Analyses conducting GWAS across the UKBB diverse superpopulations
  ☆47Updated last month
• xinhe-lab / ctwas
  package for the causal TWAS project
  ☆38Updated last week
• variani / finemapr
  Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
  ☆29Updated 9 months ago
• joepickrell / fgwas
  Functional genomics and genome-wide association studies
  ☆64Updated 6 years ago
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆44Updated last year
• FinucaneLab / pops
  ☆64Updated 2 years ago
• andreyshabalin / MatrixEQTL
  Matrix eQTL: Ultra fast eQTL analysis via large matrix operations
  ☆61Updated last year
• mikelove / preNivolumabOnNivolumab
  EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment
  ☆52Updated last year
• immunogenomics / HLA-TAPAS
  HLA-TAPAS pipeline for HLA association and fine-mapping studies
  ☆48Updated 10 months ago
• psoerensen / qgg
  Statistical tools for Quantitative Genetic Analyses
  ☆34Updated this week
• xqwen / torus
  QTL Discovery using Annotations
  ☆23Updated last year
• saigegit / SAIGE
  Development for SAIGE and SAIGE-GENE(+)
  ☆66Updated 4 months ago
• natsuhiko / rasqual
  Robust Allele Specific Quantification and quality controL
  ☆37Updated 2 years ago
• mccoy-lab / MAGE
  Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…
  ☆32Updated 3 months ago
• eQTL-Catalogue / qtlmap
  Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue
  ☆45Updated last week
• n-mounier / bGWAS
  R package to perform Bayesian Genome-Wide Association Studies
  ☆38Updated last year
• freeseek / gwaspipeline
  ☆40Updated 6 years ago
• omerwe / polyfun
  PolyFun (POLYgenic FUNctionally-informed fine-mapping)
  ☆89Updated 3 months ago
• snystrom / memes
  An R interface to the MEME Suite
  ☆45Updated last month
• neurogenomics / MAGMA_Celltyping
  Find causal cell-types underlying complex trait genetics
  ☆71Updated last month
• ajaynadig / bhr
  Suite of heritability and genetic correlation estimation tools for exome-sequencing data
  ☆31Updated last month
• weizhou0 / GATE
  ☆19Updated last year
• sritchie73 / liftOverPlink
  A wrapper for liftOver for converting plink genotype data between different genome reference builds
  ☆48Updated 5 years ago