Alternatives and similar repositories for nci-webtools-dceg-linkage

Users that are interested in nci-webtools-dceg-linkage are comparing it to the libraries listed below

• andrewparkermorgan / argyle
  An R package for import, QC and analysis of Illumina Infinium genotyping arrays
  ☆34Updated 7 years ago
• adimitromanolakis / sim1000G
  Simulation of rare and common variants based on 1000 genomes data
  ☆19Updated 3 years ago
• thelovelab / tximeta
  Transcript quantification import with automatic metadata detection
  ☆68Updated this week
• Simon-Coetzee / motifBreakR
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆29Updated last year
• lindsayrutter / bigPint
  Bioconductor package that makes BIG data pint-sized.
  ☆21Updated last year
• fauman / EGEA
  Every Gene Ever Annotated in published GWAS
  ☆48Updated 2 years ago
• gtrichard / deepStats
  deepStats: a stastitical toolbox for deeptools and genomic signals
  ☆34Updated 4 years ago
• corbinq / apex
  Toolkit for QTL mapping and meta-analysis.
  ☆17Updated 3 years ago
• G3viz / g3viz
  Lollipop-diagram to interactively visualize genetic mutations
  ☆32Updated 11 months ago
• lpantano / DEGreport
  Create a cromphensive report of DEG list coming from any analysis of RNAseq data
  ☆25Updated last year
• slowkow / proxysnps
  Get SNP proxies from the 1000 Genomes Project.
  ☆30Updated 6 years ago
• statgen / locuszoom-standalone
  Create regional association plots from GWAS or meta-analysis
  ☆61Updated 5 years ago
• xqwen / dap
  software package for integrative genetic association analysis
  ☆35Updated 2 years ago
• Shians / Glimma
  Glimma R package
  ☆50Updated 11 months ago
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 3 years ago
• mani2012 / BatchQC
  Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.
  ☆35Updated 2 years ago
• ajaynadig / bhr
  Suite of heritability and genetic correlation estimation tools for exome-sequencing data
  ☆34Updated 6 months ago
• mahmoudibrahim / JAMM
  JAMM Peak Finder for Sequencing Datasets
  ☆29Updated 5 years ago
• zhengxwen / SeqArray
  Data management of large-scale whole-genome sequence variant calls using GDS files (Development version only)
  ☆46Updated this week
• kauralasoo / wiggleplotr
  A small R package to make sequencing read coverage plots in R.
  ☆39Updated 3 years ago
• Ensembl / postgap
  Linking GWAS studies to genes through cis-regulatory datasets
  ☆39Updated 2 years ago
• joepickrell / fgwas
  Functional genomics and genome-wide association studies
  ☆67Updated 7 years ago
• kdkorthauer / dmrseq
  R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing
  ☆61Updated 3 months ago
• brentp / 450k-analysis-guide
  A Practical (And Opinionated) Guide To Analyzing 450K Data
  ☆35Updated 10 years ago
• stephaniehicks / qsmooth
  Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…
  ☆52Updated 2 years ago
• brentp / combined-pvalues
  combining p-values using modified stouffer-liptak for spatially correlated results (probes)
  ☆46Updated 3 years ago
• gagneurlab / OUTRIDER
  OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data
  ☆53Updated last month
• Dowell-Lab / DAStk
  Differential ATAC-seq toolkit
  ☆27Updated last year
• zhanxw / seqminer
  Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R
  ☆31Updated 10 months ago
• MonashBioinformaticsPlatform / varistran
  R package providing Variance Stabilizing Transformations appropriate for RNA-Seq data
  ☆21Updated 3 months ago