Nealelab / UKBB_ldsc_scriptsLinks
Scripts used for generating Neale Lab UKB results
☆20Updated 2 years ago
Alternatives and similar repositories for UKBB_ldsc_scripts
Users that are interested in UKBB_ldsc_scripts are comparing it to the libraries listed below
Sorting:
- Create LocusZoom-style plots in R.☆22Updated 2 years ago
- LocusCompare is an interactive visualization tool for comparing two genetic association datasets.☆21Updated 2 years ago
- ☆21Updated 4 months ago
- software package for integrative genetic association analysis☆35Updated 2 years ago
- ☆35Updated 2 years ago
- Sample code for ldsc analyses in UKBB☆31Updated 2 years ago
- Code for creating cell-type-specific regulatory element annotation files☆18Updated last year
- FOCUS: Fine-mapping Of CaUsal gene Sets☆46Updated last year
- Mediated Expression Score Regression (MESC)☆26Updated 3 years ago
- QTL Discovery using Annotations☆25Updated 2 years ago
- Specification for the GWAS-VCF format (manuscript in preparation)☆24Updated 4 years ago
- Heritability, genetic correlation and functional enrichment estimation for case-control studies☆19Updated last year
- Code for implementing Mendelian randomization investigations☆18Updated 9 years ago
- harmonization, liftover, and imputation of summary statistics from GWAS☆33Updated 5 years ago
- ☆18Updated 7 years ago
- Primo☆16Updated 3 years ago
- This is the repository accompanying the pre-print titled, "Genome-wide analyses of 200,453 individuals yield new insights into the causes…☆13Updated 3 years ago
- Genetic correlation calculation pipeline via summary statistics for PheWeb☆13Updated 6 years ago
- Scripts for running a sibling GWAS☆15Updated 3 years ago
- Benchmarking gene and variant prioritization algorithms for GWAS data☆15Updated 5 years ago
- Suite of heritability and genetic correlation estimation tools for exome-sequencing data☆34Updated 6 months ago
- causal TWAS (cTWAS)☆45Updated last week
- Colocalization analysis of genetic association signals☆52Updated 2 months ago
- An R package for creating mirrored Manhattan plots☆18Updated 2 years ago
- ☆18Updated 3 years ago
- ☆33Updated last year
- MultiSKAT is an R-package focused at rare-variant analysis of continuous multiple phenotype data. This project contains the R-codes/funct…☆11Updated 6 years ago
- Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform …☆27Updated 2 years ago
- ☆23Updated 4 years ago
- Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).☆14Updated 2 years ago