Alternatives and similar repositories for UKBB_ldsc_scripts:

Users that are interested in UKBB_ldsc_scripts are comparing it to the libraries listed below

• Nealelab / UKBB_ldsc
  Sample code for ldsc analyses in UKBB
  ☆30Updated last year
• RajLabMSSM / ggLocusZoom
  Create LocusZoom-style plots in R.
  ☆21Updated last year
• kjgleason / Primo
  Primo
  ☆16Updated 3 years ago
• ajaynadig / bhr
  Suite of heritability and genetic correlation estimation tools for exome-sequencing data
  ☆33Updated last month
• thewonlab / H-MAGMA
  ☆32Updated last year
• RajLabMSSM / catalogueR
  Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).
  ☆13Updated 2 years ago
• precimed / python_convert
  A collection of various utilities for GWAS summary statistics
  ☆26Updated 9 months ago
• Jmtorres138 / TACTICAL
  Tissue of ACTion scores for Investigating Complex trait-Associated Loci
  ☆13Updated 3 years ago
• mikelove / mrlocus
  Older repo for MRLocus. See new website for software usage guide:
  ☆15Updated last year
• anastasia-lucas / hudson
  An R package for creating mirrored Manhattan plots
  ☆18Updated 2 years ago
• yanglab-emory / TIGAR
  ☆21Updated 3 months ago
• immunogenomics / cov-ldsc
  ☆11Updated 2 years ago
• astheeggeggs / UKBB_ldsc_r2
  genetic correlation between phenotypes in the UK biobank
  ☆12Updated 11 months ago
• jrs95 / gassocplot
  Regional association plots
  ☆26Updated 10 months ago
• bogdanlab / RHOGE
  Estimate genetic correlation using predicted expression
  ☆21Updated 6 years ago
• mancusolab / sushie
  Software to perform multi-ancestry SNP fine-mapping on molecular data
  ☆19Updated 3 months ago
• xqwen / dap
  software package for integrative genetic association analysis
  ☆34Updated last year
• oliviasabik / RACER
  An R package for generating comparative regional association plots
  ☆18Updated 2 months ago
• MRCIEU / PhenoSpD
  ☆18Updated 7 years ago
• sb452 / mr-code
  Code for implementing Mendelian randomization investigations
  ☆16Updated 9 years ago
• hailianghuang / FM-summary
  Fine-mapping method only using summary statistics
  ☆18Updated 8 years ago
• boxiangliu / locuscompare
  LocusCompare is an interactive visualization tool for comparing two genetic association datasets.
  ☆21Updated last year
• FINNGEN / saige-pipelines
  ☆16Updated last year
• xqwen / ptwas
  ☆17Updated 3 years ago
• immunogenomics / IMPACT
  Code for creating cell-type-specific regulatory element annotation files
  ☆18Updated 8 months ago
• omerwe / S-PCGC
  Heritability, genetic correlation and functional enrichment estimation for case-control studies
  ☆19Updated last year
• hakyimlab / summary-gwas-imputation
  harmonization, liftover, and imputation of summary statistics from GWAS
  ☆31Updated 4 years ago
• ilarsf / gwasTools
  Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)
  ☆30Updated last year
• huwenboshi / s-ldxr
  Stratified squared trans-ethnic genetic correlation
  ☆12Updated 2 years ago
• MRCIEU / gwas-vcf-specification
  Specification for the GWAS-VCF format (manuscript in preparation)
  ☆24Updated 3 years ago