Alternatives and similar repositories for UKBB_ldsc_scripts

Users that are interested in UKBB_ldsc_scripts are comparing it to the libraries listed below

• RajLabMSSM / ggLocusZoom
  Create LocusZoom-style plots in R.
  ☆22Updated 2 years ago
• Nealelab / UKBB_ldsc
  Sample code for ldsc analyses in UKBB
  ☆30Updated 2 years ago
• ajaynadig / bhr
  Suite of heritability and genetic correlation estimation tools for exome-sequencing data
  ☆34Updated 4 months ago
• hakyimlab / summary-gwas-imputation
  harmonization, liftover, and imputation of summary statistics from GWAS
  ☆32Updated 4 years ago
• thewonlab / H-MAGMA
  ☆33Updated 2 years ago
• kjgleason / Primo
  Primo
  ☆16Updated 3 years ago
• RajLabMSSM / catalogueR
  Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).
  ☆13Updated 2 years ago
• xqwen / ptwas
  ☆18Updated 3 years ago
• MRCIEU / PhenoSpD
  ☆18Updated 7 years ago
• yanglab-emory / TIGAR
  ☆21Updated 2 months ago
• statgen / pheweb-rg-pipeline
  Genetic correlation calculation pipeline via summary statistics for PheWeb
  ☆13Updated 6 years ago
• xqwen / dap
  software package for integrative genetic association analysis
  ☆34Updated last year
• boxiangliu / locuscompare
  LocusCompare is an interactive visualization tool for comparing two genetic association datasets.
  ☆21Updated 2 years ago
• bogdanlab / RHOGE
  Estimate genetic correlation using predicted expression
  ☆22Updated 7 years ago
• huwenboshi / s-ldxr
  Stratified squared trans-ethnic genetic correlation
  ☆12Updated 3 years ago
• explodecomputer / random-metal
  Adding random effects model to the METAL software
  ☆13Updated 2 years ago
• RebeccaFine / benchmarker
  Benchmarking gene and variant prioritization algorithms for GWAS data
  ☆15Updated 5 years ago
• anastasia-lucas / hudson
  An R package for creating mirrored Manhattan plots
  ☆18Updated 2 years ago
• precimed / python_convert
  A collection of various utilities for GWAS summary statistics
  ☆27Updated last year
• jrs95 / gassocplot
  Regional association plots
  ☆26Updated last year
• tobyjohnson / gtx
  Genetics ToolboX R package
  ☆32Updated 5 years ago
• xqwen / torus
  QTL Discovery using Annotations
  ☆25Updated 2 years ago
• EmilMiP / LTFHPlus
  Implementation of LTFH++
  ☆11Updated last month
• mikelove / mrlocus
  Older repo for MRLocus. See new website for software usage guide:
  ☆15Updated last year
• astheeggeggs / UKBB_ldsc_r2
  genetic correlation between phenotypes in the UK biobank
  ☆12Updated last year
• immunogenomics / IMPACT
  Code for creating cell-type-specific regulatory element annotation files
  ☆18Updated last year
• GRealesM / RapidoPGS
  A rapido and lightweight method for PGS computation
  ☆14Updated 4 months ago
• sb452 / mr-code
  Code for implementing Mendelian randomization investigations
  ☆17Updated 9 years ago
• cgrace1978 / manhplot
  Manhattan++
  ☆28Updated last year
• jinghuazhao / SUMSTATS
  Format of GWAS summary statistics.
  ☆12Updated 10 months ago