Alternatives and similar repositories for UKBB_ldsc_scripts

Users that are interested in UKBB_ldsc_scripts are comparing it to the libraries listed below

• RajLabMSSM / ggLocusZoom
  Create LocusZoom-style plots in R.
  ☆22Updated 2 years ago
• yanglab-emory / TIGAR
  ☆22Updated 2 months ago
• thewonlab / H-MAGMA
  ☆35Updated 2 years ago
• LaurenceHowe / SiblingGWAS
  Scripts for running a sibling GWAS
  ☆16Updated 3 years ago
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆47Updated 2 years ago
• MRCIEU / gwas-vcf-specification
  Specification for the GWAS-VCF format (manuscript in preparation)
  ☆25Updated 4 years ago
• xqwen / dap
  software package for integrative genetic association analysis
  ☆35Updated 2 years ago
• immunogenomics / IMPACT
  Code for creating cell-type-specific regulatory element annotation files
  ☆18Updated last year
• xqwen / torus
  QTL Discovery using Annotations
  ☆28Updated 2 years ago
• Nealelab / UKBB_ldsc
  Sample code for ldsc analyses in UKBB
  ☆31Updated 2 years ago
• boxiangliu / locuscompare
  LocusCompare is an interactive visualization tool for comparing two genetic association datasets.
  ☆21Updated 2 years ago
• MRCIEU / PhenoSpD
  ☆18Updated 7 years ago
• astrazeneca-cgr-publications / PEACOK
  Phenome Exome Association and Correlation Of Key phenotypes
  ☆30Updated 4 years ago
• douglasyao / mesc
  Mediated Expression Score Regression (MESC)
  ☆26Updated 2 weeks ago
• cumc / bioworkflows
  In-house computational biology workflows at Columbia Neurology
  ☆36Updated 2 months ago
• RebeccaFine / benchmarker
  Benchmarking gene and variant prioritization algorithms for GWAS data
  ☆15Updated 5 years ago
• qlu-lab / PUMAS
  Fine-tuning polygenic risk score models using GWAS summary statistics
  ☆54Updated last month
• ajaynadig / bhr
  Suite of heritability and genetic correlation estimation tools for exome-sequencing data
  ☆35Updated 8 months ago
• kjgleason / Primo
  Primo
  ☆16Updated 4 years ago
• hakyimlab / gtex-gwas-analysis
  ☆24Updated 4 years ago
• yiminghu / post-GWAS-pipeline
  A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data
  ☆29Updated 3 years ago
• xinhe-lab / ctwas
  causal TWAS (cTWAS)
  ☆47Updated this week
• mancusolab / sushie
  Software to perform multi-ancestry SNP fine-mapping on molecular data
  ☆28Updated 3 months ago
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆53Updated 5 months ago
• anastasia-lucas / hudson
  An R package for creating mirrored Manhattan plots
  ☆18Updated 3 years ago
• ilarsf / gwasTools
  Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)
  ☆33Updated 5 months ago
• karltayeb / cafeh
  ☆13Updated 2 years ago
• mancusolab / twas_sim
  Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform …
  ☆29Updated 2 years ago
• tobyjohnson / gtx
  Genetics ToolboX R package
  ☆32Updated 5 years ago
• RajLabMSSM / catalogueR
  Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).
  ☆14Updated 2 years ago