opentargets / genetics-finemapping
Fine-mapping pipeline for Open Targets Genetics
☆26Updated 2 years ago
Alternatives and similar repositories for genetics-finemapping:
Users that are interested in genetics-finemapping are comparing it to the libraries listed below
- Benchmarking gene and variant prioritization algorithms for GWAS data☆15Updated 5 years ago
- software package for integrative genetic association analysis☆34Updated last year
- Repository for resources we'd like to share with the community.☆24Updated 3 years ago
- Harmonise GWAS summary statistics against a reference VCF☆41Updated 3 years ago
- GWAS gold standards repository☆34Updated last year
- Convert GWAS summary statistics to VCF☆48Updated 2 years ago
- Linking GWAS studies to genes through cis-regulatory datasets☆39Updated 2 years ago
- Software Pipeline for Integrative Genetic Association Analysis: Probabilistic Assessment of Enrichment and Colocalization☆25Updated 5 years ago
- harmonization, liftover, and imputation of summary statistics from GWAS☆31Updated 4 years ago
- R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping…☆12Updated last year
- ☆35Updated 4 years ago
- ☆32Updated last year
- Here we develop the software for the method LDpredfunct described in https://www.biorxiv.org/content/early/2018/07/24/375337☆17Updated 8 months ago
- Colocalization analysis of genetic association signals☆52Updated 5 months ago
- Suite of heritability and genetic correlation estimation tools for exome-sequencing data☆33Updated 2 months ago
- Colocalisation pipeline for Open Targets Genetics☆17Updated 3 years ago
- Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).☆13Updated 2 years ago
- An R package for creating mirrored Manhattan plots☆18Updated 2 years ago
- Network representation of LDSC results☆27Updated 3 years ago
- ☆16Updated last year
- Fine-tuning polygenic risk score models using GWAS summary statistics☆49Updated last month
- Create regional association plots from GWAS or meta-analysis☆61Updated 5 years ago
- Descriptions/scripts for pre-process and processed data for FUMA cell specificity analyses (scRNA-seq)☆23Updated 5 years ago
- Proteome-Wide Association Study☆45Updated 4 years ago
- Report reverse and ambiguous strand SNPs in GWAS data☆33Updated 5 years ago
- Code supporting analyses in paper on fine-mapping AD loci☆15Updated 3 years ago
- Statistical fine-mapping pipeline in FinnGen☆30Updated 2 months ago
- Software to help identify overlap between association scan results and GWAS hit catalogs.☆15Updated 2 years ago
- TOPMed analysis pipeline☆52Updated last year
- Functional genomics and genome-wide association studies☆67Updated 6 years ago