Alternatives and similar repositories for STEAP

Users that are interested in STEAP are comparing it to the libraries listed below

• konumat / Trans-Phar
  GWAS-TWAS (Transcriptome-wide association study)-Pharmacological library integration pipeline
  ☆19Updated 4 years ago
• TiffanyAmariuta / TCSC
  TCSC (Tissue co-regulation score regression) is a statistical genetics method to identify causal tissues in diseases and complex traits.
  ☆14Updated last year
• rhhao / csMR
  Perform cell-stratified MR analysis through integrating GWAS and QTL data
  ☆35Updated 5 months ago
• BennyStrobes / TGFM
  Tissue-Gene Fine-Mapping
  ☆26Updated 9 months ago
• precimed / pleiofdr
  Pleiotropy-informed conditional and conjunctional false discovery rate
  ☆36Updated 7 months ago
• alexploner / cfdr.pleio
  cfdr.pleio is an R package implementing conditional and conjunctional false discovery rates for studying pleiotropic gene variants betwee…
  ☆18Updated 2 years ago
• StatFunGen / pecotmr
  Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
  ☆31Updated last month
• ylaboratory / seismic
  Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data
  ☆25Updated 3 weeks ago
• YangLabHKUST / XPASS
  Cross-population analysis using GWAS summary statistics
  ☆18Updated last year
• hakyimlab / scPrediXcan
  ☆37Updated this week
• mancusolab / ma-focus
  MA-FOCUS: Multi-Ancestry Fine-mapping Of CaUsal gene Sets
  ☆38Updated last year
• BIG-S2 / GWAS
  GWAS Summary Statistics for Brain Imaging Phenotypes
  ☆20Updated 4 years ago
• marcoralab / MRcovid
  ☆13Updated 3 years ago
• huwenboshi / hess
  Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
  ☆42Updated 7 years ago
• cnfoley / hyprcoloc
  R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data
  ☆57Updated 4 years ago
• yuanzhongshang / PMR
  ☆27Updated 5 years ago
• opain / eQTL_to_TWAS
  Methods for converting eQTL summary statistics into TWAS SNP-weights
  ☆13Updated 6 months ago
• bogdanlab / RHOGE
  Estimate genetic correlation using predicted expression
  ☆23Updated 7 years ago
• xiashen / MultiABEL
  Multi-Trait Genome-Wide Association Analysis
  ☆19Updated 2 years ago
• Marijn-Schipper / FLAMES
  FLAMES: Accurate gene prioritization in GWAS loci
  ☆57Updated 3 weeks ago
• ChongWuLab / SUMMIT
  Summary-level Unified Method for Modeling Integrated Transcriptome
  ☆10Updated 2 years ago
• precimed / gsa-mixer
  ☆20Updated 3 months ago
• RayDebashree / PLACO
  A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics
  ☆37Updated 3 months ago
• ckhunsr1 / PUMICE
  PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics
  ☆12Updated 2 years ago
• cnfoley / mrclust
  R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.
  ☆17Updated 4 years ago
• scbaca / cwas
  Workflow for performing cistrome-wide associations studies
  ☆11Updated 3 years ago
• jinghuazhao / EWAS-fusion
  Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)
  ☆12Updated 2 years ago
• mkanai / ldsc-corrplot-rg
  corrplot of LDSC genetic correlation results
  ☆56Updated 3 years ago
• daiqile96 / OTTERS
  A powerful TWAS framework leveraging summary-level reference data
  ☆32Updated 9 months ago
• jrs95 / hyprcoloc
  Hypothesis Prioritisation in multi-trait Colocalization
  ☆55Updated last year