erwinerdem / STEAP
Single cell Type Enrichment Analysis for Phenotypes (STEAP)
☆12Updated 3 years ago
Alternatives and similar repositories for STEAP:
Users that are interested in STEAP are comparing it to the libraries listed below
- GWAS-TWAS (Transcriptome-wide association study)-Pharmacological library integration pipeline☆18Updated 3 years ago
- Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.☆21Updated last week
- Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data☆14Updated 3 months ago
- Cross-population analysis using GWAS summary statistics☆18Updated 8 months ago
- Collaborative genetic studies of idiopathic pulmonary fibrosis☆16Updated last month
- ☆23Updated 4 years ago
- Summary-level Unified Method for Modeling Integrated Transcriptome☆10Updated last year
- PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics☆12Updated last year
- Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)☆12Updated last year
- ☆11Updated 2 years ago
- ☆17Updated 3 months ago
- Pleiotropy-informed conditional and conjunctional false discovery rate☆28Updated last year
- MA-FOCUS: Multi-Ancestry Fine-mapping Of CaUsal gene Sets☆26Updated 10 months ago
- Methods for converting eQTL summary statistics into TWAS SNP-weights☆13Updated 11 months ago
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆42Updated 6 years ago
- TCSC (Tissue co-regulation score regression) is a statistical genetics method to identify causal tissues in diseases and complex traits.☆13Updated 5 months ago
- xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs☆30Updated last month
- R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data☆47Updated 4 years ago
- harmonization, liftover, and imputation of summary statistics from GWAS☆31Updated 4 years ago
- R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.☆15Updated 3 years ago
- ☆18Updated last year
- Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1☆18Updated 4 years ago
- Code repository for Pietzner M, Wheeler E, et al. 2021 "Mapping the proteo-genomic convergence of human diseases"☆23Updated 3 years ago
- GENI plots to visualise results from genome-wide association studies☆27Updated 4 months ago
- Regional association plots☆25Updated 11 months ago
- Estimate Bias Due To Sample Overlap In Mendelian Randomization Studies☆11Updated 2 years ago
- Perform cell-stratified MR analysis through integrating GWAS and QTL data☆24Updated 4 months ago
- Integration of TWAS and Colocalization Analysis☆15Updated 4 months ago