ELELAB / TCGAbiolinks_examplesLinks
repository with the scripts to run examples of the publications with new functionalities of TCGAbiolinks
☆16Updated 3 years ago
Alternatives and similar repositories for TCGAbiolinks_examples
Users that are interested in TCGAbiolinks_examples are comparing it to the libraries listed below
Sorting:
- Single-cell transcriptome profiling of an adult human cell atlas of 15 major organs☆39Updated 2 years ago
- Deep Learning based cell composition analysis with Scaden.☆88Updated last year
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆31Updated 5 years ago
- Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVI…☆49Updated 4 years ago
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆22Updated 4 years ago
- Collaboration with Montine, Chang, and Montgomery labs on Alzheimers / Parkinson's ATAC-seq analysis☆46Updated 5 years ago
- Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data☆28Updated 5 years ago
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆38Updated 3 years ago
- SPROD: Spatial expression profiling de-noising☆36Updated 2 years ago
- Repository for Cibersortx☆62Updated 4 years ago
- ☆42Updated 7 years ago
- MeDuSA is a fine-resolution cellular deconvolution method that leverages scRNA-seq data as a reference to estimate cell-state abundance i…☆43Updated 11 months ago
- Bostongene cell deconvolution algorithm from RNAseq☆60Updated 2 years ago
- scLearn:Learning for single cell assignment☆35Updated last year
- Single-cell Lung Cancer Atlas with 1.2M cells☆87Updated last year
- Tumor Immune Single-cell Hub☆22Updated 5 years ago
- Tools used in Human Cell Landscape(HCL)☆56Updated 5 years ago
- ☆17Updated 2 years ago
- The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This al…☆41Updated this week
- ☆32Updated 4 years ago
- Immune evasion before tumor invasion in early squamous lung cell carcinogenesis☆17Updated 4 years ago
- ☆96Updated 5 years ago
- Pan-cancer human brain metastases atlas at single-cell resolution☆23Updated 10 months ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated 2 years ago
- An R package for classification of immune subtypes, in cancer, using gene expression data.☆46Updated this week
- Code relating to http://dx.doi.org/10.2139/ssrn.4132721☆11Updated 3 years ago
- ☆20Updated last year
- A portable and fast single cell type identifier☆63Updated 4 years ago
- ☆63Updated 2 years ago
- Single cell RNA analysis about paper “Caloric restriction reprograms the single-cell transcriptional landscape of Rattus norvegicus aging…☆29Updated 6 years ago