ELELAB / TCGAbiolinks_examplesLinks
repository with the scripts to run examples of the publications with new functionalities of TCGAbiolinks
☆16Updated 3 years ago
Alternatives and similar repositories for TCGAbiolinks_examples
Users that are interested in TCGAbiolinks_examples are comparing it to the libraries listed below
Sorting:
- scLearn:Learning for single cell assignment☆35Updated last year
- Deep Learning based cell composition analysis with Scaden.☆85Updated last year
- ☆27Updated 4 years ago
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆22Updated 4 years ago
- Spatial Transcriptomic Analysis of OSCC samples☆27Updated 2 years ago
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆31Updated 5 years ago
- Collection of scripts for analysis of pan fetal immune atlas☆28Updated 3 years ago
- MeDuSA is a fine-resolution cellular deconvolution method that leverages scRNA-seq data as a reference to estimate cell-state abundance i…☆43Updated 9 months ago
- Tools used in Human Cell Landscape(HCL)☆56Updated 5 years ago
- Bostongene cell deconvolution algorithm from RNAseq☆59Updated last year
- Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVI…☆49Updated 4 years ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated 2 months ago
- BERMUDA (Batch Effect ReMoval Using Deep Autoencoders) is a novel transfer-learning-based method for batch correction in scRNA-seq data.☆31Updated 5 years ago
- Single-cell transcriptome profiling of an adult human cell atlas of 15 major organs☆39Updated last year
- Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data☆27Updated 5 years ago
- ☆13Updated 7 years ago
- ☆40Updated 7 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆66Updated 5 months ago
- cTPnet Package☆27Updated 3 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated 2 years ago
- ☆96Updated 4 years ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆38Updated 4 years ago
- Tumor-Infiltrating CD8 Lymphocytes states prediction☆13Updated last year
- Spatial Cellular Estimator for Tumors☆60Updated this week
- Code for paper "A deep profile of gene expression across 18 human cancers"☆30Updated last year
- Identify genes with spatial expression trends in single-cell gene expression data☆50Updated 7 years ago
- ☆61Updated last year
- ☆17Updated 2 years ago
- SPROD: Spatial expression profiling de-noising☆36Updated 2 years ago
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆35Updated 3 years ago