☆20Jul 3, 2022Updated 4 years ago
Alternatives and similar repositories for Elements-of-Style-Reproducible-Workflow-Creation-Maintenance-Tutorial
Users that are interested in Elements-of-Style-Reproducible-Workflow-Creation-Maintenance-Tutorial are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆51May 26, 2026Updated 4 months ago
- PSI-MOD ontology for modified and unmodified amino acid residues☆16Sep 18, 2026Updated 3 weeks ago
- Nextflow implementation of the smoove workflow and other tools for SV calling and QC☆12Nov 12, 2020Updated 5 years ago
- ☆10Aug 29, 2012Updated 14 years ago
- A collection of Python modules equivalent to R ReQTL Toolkit aims to identify the association between expressed SNVs with their gene expr…☆11Jan 20, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Joint calling of gVCF, following GATK4 Best Practices☆12Apr 3, 2019Updated 7 years ago
- Exercises for training scientists to perform some RNA-seq analyses.☆11Oct 7, 2019Updated 7 years ago
- TADA - Targeted Amplicon Diversity Analysis - a DADA2-focused Nextflow workflow for any targeted amplicon region☆21Sep 9, 2026Updated last month
- Structural variant pipeline☆18Jun 25, 2020Updated 6 years ago
- The software involved in the MetaPhase project, as described in G3 (http://dx.doi.org/10.1534/g3.114.011825)☆17Oct 12, 2018Updated 8 years ago
- ☆20Oct 10, 2020Updated 6 years ago
- ☆17Jun 29, 2026Updated 3 months ago
- An interactive learning resource for next-generation sequencing (NGS) techniques☆34Oct 12, 2018Updated 8 years ago
- Pipelines for processing malaria parasite and mosquito genome sequence data.☆15Nov 2, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- First pass at a thin wrapper around the Monarch API and ChatGPT plugin☆12Mar 21, 2025Updated last year
- TE tools for TE RNASeq and smallRNASeq analysis with galaxy☆12Apr 2, 2021Updated 5 years ago
- Transforming SemRep Predications into an Open Biomedical Linked Data Resource☆11Jan 26, 2018Updated 8 years ago
- Whole Genome Sequenceing Structural Variation Pipelines☆18Apr 4, 2019Updated 7 years ago
- tips and tricks in genome-wide association studies - a tutorial☆14Jul 25, 2023Updated 3 years ago
- Find out if your SSH keys are safe!☆12Oct 18, 2024Updated last year
- Issue tracker for anything related to https://prefix.dev☆12Nov 8, 2022Updated 3 years ago
- A list of inspirational and thought-provoking reads about women who code.☆10Nov 20, 2025Updated 10 months ago
- ☆54Jan 22, 2026Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Gromacs molecular dynamics simulation analysis scripts☆10Apr 5, 2022Updated 4 years ago
- Brings SingleCellExperiment objects to the tidyverse☆37Sep 15, 2026Updated last month
- Snakemake pipeline for microexon discovery and quantification☆21Oct 9, 2026Updated last week
- web based visualisation of molecular interaction data☆12Sep 16, 2026Updated last month
- A toolset to analyze genomic footprinting data☆21Jul 28, 2026Updated 2 months ago
- Multi-omics multi-layered network integration and interpretation☆15Oct 15, 2024Updated 2 years ago
- This repository contains the reference genome assembly Ash1, built from data collected from an Ashkenazi individual.☆12Feb 2, 2022Updated 4 years ago
- ☆13Apr 16, 2026Updated 6 months ago
- See: https://www.iscb.org/ismb2018/3511#am1☆18Sep 10, 2018Updated 8 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Day 2 of ACAD's 2018 Advanced Bioinformatics Workshop☆12Nov 27, 2018Updated 7 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆18Nov 26, 2025Updated 10 months ago
- A phylogeny dating method using least-squares algorithms and criteria☆36Oct 25, 2024Updated last year
- Workflows for processing RNA data for germline short variant discovery with GATK (v3+v4) and related tools☆54Dec 19, 2019Updated 6 years ago
- R package for generating beautiful and customizable plots for the exons and introns of any gene☆12Jul 26, 2021Updated 5 years ago
- Superseded by https://github.com/MD-Anderson-Bioinformatics/BatchEffectsPackage☆12Aug 13, 2020Updated 6 years ago
- Little code snippets that do (hopefully) useful things☆23Jul 24, 2023Updated 3 years ago