Alternatives and similar repositories for cycles_hawick_james

Users that are interested in cycles_hawick_james are comparing it to the libraries listed below

• GuillaumeHolley / BlastGraph
  BlastGraph is a new tool for computing intensive approximate pattern matching in a sequence graph or a de-Bruijn graph. Given an oriented…
  ☆12Updated 12 years ago
• nicolaprezza / lz-rlbwt
  Run-length compressed BWT with LZ77 sampled suffix array
  ☆10Updated 3 years ago
• uio-cels / genomicgraphcoords
  Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes
  ☆11Updated 8 years ago
• jts / dbgfm
  FM-index representation of a de Bruijn graph
  ☆27Updated 8 years ago
• solonas13 / maw
  MAW: a suite on the computation and application of Minimal Absent Words
  ☆16Updated 3 years ago
• lh3 / sdg
  EXPERIMENTAL implementation of side graph
  ☆10Updated 10 years ago
• kieranrcampbell / ouijaflow
  Probabilistic single-cell pseudotime with Edward+Tensorflow
  ☆12Updated 8 years ago
• yunwilliamyu / quartz
  ☆15Updated 9 years ago
• lh3 / lh3-snippets
  ☆14Updated 5 years ago
• phiweger / nanotext
  Proteins as words, genomes as documents.
  ☆19Updated 4 years ago
• jlguillaume / louvain
  C implementation of the Louvain method for community detection in graphs
  ☆12Updated 5 years ago
• RUSH-LAB / RAMBO
  ☆20Updated 5 years ago
• urbanslug / graphite
  A varitation graph tool
  ☆10Updated 5 years ago
• jxz12 / s_gd2
  Stress-based Graph Drawing by Stochastic Gradient Descent
  ☆48Updated 2 years ago
• epierson9 / ZIMM
  Zero-inflated mixture model for single-cell data.
  ☆14Updated 9 years ago
• csirac / dynamicDBG
  Practical Dynamic de Bruijn Graphs
  ☆18Updated 5 years ago
• PanosFirmpas / bamToBigWig
  Directly create a bigwig file with signal derived from a sorted and indexed bam file.
  ☆11Updated 8 years ago
• lynxoid / nimbliner
  nimble aligner that will map your reads to the references on a laptop
  ☆11Updated 8 years ago
• elucify / blast-docs
  Wiki form of BLAST documentation from NCBI
  ☆16Updated 8 years ago
• ihh / trajectory-likelihood
  Calculate indel trajectory likelihoods using methods of Miklós, Lunter & Holmes (2004), De Maio (2020), and Holmes (2020)
  ☆14Updated 3 years ago
• splatlab / debgr
  deBGR: An Efficient and Near-Exact Representation of the Weighted de Bruijn Graph
  ☆30Updated 4 years ago
• luizirber / 2018-python-rust
  This work presents a way to write extensions in Rust and use them in Python, using sourmash as an example.
  ☆20Updated 6 years ago
• bioinfologics / sdg
  Sequence Distance Graph framework: graph + reads + mapping + analysis
  ☆26Updated 3 years ago
• bcgsc / ChopStitch
  Finding putative exons and constructing splicegraphs using Trans-ABySS contigs
  ☆11Updated 6 years ago
• vgteam / xg-old
  succinct labeled graphs with collections and paths
  ☆15Updated 6 years ago
• Malfoy / BCALM
  de Bruijn CompAction in Low Memory
  ☆22Updated 9 years ago
• LiuBioinfo / SeqOthello
  SeqOthello supports fast coverage query and containment query.
  ☆12Updated 6 years ago
• blachlylab / mucor
  ☆12Updated 8 years ago
• neuralyzer / pyabc
  pyABC: distributed, likelihood-free inference
  ☆13Updated 7 years ago
• YeWenting / sGLMM
  Implementation for sGLMM (Sparse graph-structured linear mixed model)
  ☆15Updated 2 years ago