Alternatives and similar repositories for lightning-server-legacy

Users that are interested in lightning-server-legacy are comparing it to the libraries listed below

• PriceLab / snapr
  SNAPR: a bioinformatics pipeline for efficient and accurate RNA-seq alignment and analysis
  ☆25Updated 10 years ago
• lh3 / sdg
  EXPERIMENTAL implementation of side graph
  ☆10Updated 10 years ago
• amplab / smash
  Benchmarking toolkit for variant calling
  ☆48Updated 5 years ago
• yvdriess / precipes
  Parallel Recipes : parallel workflow execution made easy
  ☆13Updated 10 years ago
• KHP-Informatics / bioindocker15
  [Bio in Docker] Symposium 2015
  ☆21Updated 8 years ago
• vgteam / xg-old
  succinct labeled graphs with collections and paths
  ☆15Updated 7 years ago
• ekg / 1000G-integration
  variant integration methods for the 1000 Genomes Project
  ☆21Updated 7 years ago
• uio-cels / genomicgraphcoords
  Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes
  ☆11Updated 8 years ago
• rabix / rabix
  [Historical] Reproducible Analyses for Bioinformatics
  ☆106Updated 6 years ago
• mourisl / Lighter
  Fast and memory-efficient sequencing error corrector
  ☆94Updated last year
• quinlan-lab / vcftidy
  normalize, left-align, trim, validate and clean VCF files
  ☆20Updated 10 years ago
• Novartis / yap
  High throughput, pain-free big data pipelines.
  ☆30Updated 8 years ago
• lweasel / piquant
  A pipeline to assess the quantification of transcripts.
  ☆19Updated 3 years ago
• PMBio / limix-backup
  ☆45Updated 9 years ago
• sebhtml / ray
  Ray -- Parallel genome assemblies for parallel DNA sequencing
  ☆67Updated 8 years ago
• jtaghiyar / kronos
  A workflow assembler for cancer genome analytics and informatics
  ☆19Updated 9 years ago
• gkno / gkno_launcher
  The gkno launcher for executing tools or pipelines
  ☆31Updated 8 years ago
• mfiers / Moa
  Lightweight workflows in bioinformatics:
  ☆24Updated 11 years ago
• ga4gh / task-execution-server
  ☆11Updated 9 years ago
• blachlylab / mucor
  ☆12Updated 8 years ago
• csiro-crop-informatics / biokanga
  An integrated high performance bioinformatics toolkit
  ☆23Updated 6 years ago
• pmelsted / KmerStream
  Streaming algorithm for computing kmer statistics for massive genomics datasets
  ☆54Updated 5 years ago
• bioboxes / rfc
  Request for comments on interchangeable bioinformatics containers
  ☆39Updated 6 years ago
• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆33Updated 6 years ago
• wurmlab / oswitch
  Provides access to complex Bioinformatics software (even BioLinux!) in just one command.
  ☆76Updated 8 years ago
• jts / dbgfm
  FM-index representation of a de Bruijn graph
  ☆27Updated 8 years ago
• Steven-N-Hart / VariantDB_Challenge
  Finding a scalable alternative to the VCF File for genomics analysis
  ☆14Updated 8 years ago
• enasequence / cramtools
  CRAM format specification and java API for read data.
  ☆59Updated 7 years ago
• brentp / hts-python
  pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)
  ☆49Updated 8 years ago
• arq5x / piledriver
  Basic, no assumptions, multi-pileup
  ☆24Updated 11 years ago