Lectures for a napari training course
☆52Aug 30, 2023Updated 2 years ago
Alternatives and similar repositories for napari-training-course
Users that are interested in napari-training-course are comparing it to the libraries listed below
Sorting:
- ☆24Sep 13, 2025Updated 5 months ago
- ☆13Mar 10, 2020Updated 5 years ago
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11May 14, 2021Updated 4 years ago
- A JupyterBook site for napari workshop materials☆10Jul 11, 2022Updated 3 years ago
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆14Feb 4, 2026Updated 3 weeks ago
- MultiModal Big Image Data Sharing and Exploration☆18Jan 13, 2023Updated 3 years ago
- Online documentation and reference for CLIJ☆28May 21, 2021Updated 4 years ago
- NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter☆64Jul 25, 2023Updated 2 years ago
- Prototype implementation of napari-integrated CNN training viewer☆14Dec 27, 2024Updated last year
- ☆10Nov 29, 2024Updated last year
- Annotate microscopy images for CNN classifier☆11May 31, 2022Updated 3 years ago
- ☆14Jan 26, 2021Updated 5 years ago
- Tutorial for SciPy 2021 Bioimage Analysis Fundamentals in Python☆31Jul 13, 2021Updated 4 years ago
- ☆22Aug 17, 2023Updated 2 years ago
- Commands and Classes for interfacing between Imaris and Fiji☆13Sep 30, 2024Updated last year
- A collection of demonstration materials for MorphoLibJ.☆12Jan 12, 2023Updated 3 years ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆30May 1, 2025Updated 10 months ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆27Feb 17, 2025Updated last year
- ☆28Nov 30, 2023Updated 2 years ago
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Jan 5, 2026Updated last month
- ☆15Jul 29, 2022Updated 3 years ago
- A tool for manual pointwise deformable registration using bigdataviewer.☆35Dec 11, 2025Updated 2 months ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆71Feb 2, 2026Updated last month
- Explainable AI model of cell behavior☆20Apr 4, 2023Updated 2 years ago
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images☆127Feb 14, 2024Updated 2 years ago
- Simple Maven project for an ImageJ2 command☆34Apr 11, 2022Updated 3 years ago
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆177Jan 17, 2026Updated last month
- Read MRC format image files into napari using the mrcfile package from CCP-EM☆19May 17, 2024Updated last year
- A place to collect information used in lectures, demos, workshops, etc.☆17Sep 26, 2024Updated last year
- Mastodon – a large-scale tracking and track-editing framework for large, multi-view images.☆81Feb 3, 2026Updated 3 weeks ago
- ☆51May 1, 2025Updated 10 months ago
- ☆112Feb 19, 2026Updated last week
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆63Oct 27, 2024Updated last year
- ☆20Updated this week
- Tools for working with single-neuron morphological reconstructions☆22Feb 14, 2026Updated 2 weeks ago
- EXPERIMENTAL repository for exploring Ops approaches, algorithms, etc.☆19Jun 14, 2022Updated 3 years ago
- ☆21Sep 9, 2021Updated 4 years ago
- Reduce the size of existing CZI-documents by converting them to zstd-compressed CZI documents☆24Dec 17, 2025Updated 2 months ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Apr 21, 2025Updated 10 months ago