Mastodon – a large-scale tracking and track-editing framework for large, multi-view images.
☆82Feb 3, 2026Updated 2 months ago
Alternatives and similar repositories for mastodon
Users that are interested in mastodon are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆20Aug 10, 2023Updated 2 years ago
- ☆14Oct 24, 2025Updated 5 months ago
- dask empowered fast4dreg☆16Mar 11, 2026Updated last month
- Block-wise operations for large nD volumes☆46Apr 1, 2026Updated 2 weeks ago
- simple standalone BigDataViewer for multiple N5 (or HDF5) datasets☆12Mar 6, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆14Mar 30, 2026Updated 2 weeks ago
- Particle tracking by solving linear assignment problem.☆64Apr 1, 2026Updated 2 weeks ago
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆48Apr 7, 2026Updated last week
- SplineDist: Automated Cell Segmentation with Spline Curves☆72Sep 29, 2024Updated last year
- Modified version of MultiStackRegistration, for use from scripts.☆12May 18, 2022Updated 3 years ago
- Teaching materials and outline for the Pasteur Bioimage Analysis vour☆16Jun 2, 2025Updated 10 months ago
- napari widgets for start-to-finish batch processing☆15Apr 1, 2026Updated 2 weeks ago
- Generates simulated confocal data from a ground truth signal☆11Aug 16, 2022Updated 3 years ago
- ☆10Nov 29, 2024Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆42Apr 1, 2026Updated 2 weeks ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Apr 21, 2025Updated 11 months ago
- A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)☆20Apr 6, 2026Updated last week
- Course on Deep Learning for imaging using PyTorch☆13Feb 2, 2022Updated 4 years ago
- A napari plugin to view and edit layer metadata☆13Updated this week
- A tool for manual pointwise deformable registration using bigdataviewer.☆35Mar 18, 2026Updated 3 weeks ago
- Use ImageJ functionality from napari☆34Jan 2, 2026Updated 3 months ago
- sciview is a tool for visualization and interaction with ND image and mesh data☆74Feb 26, 2026Updated last month
- Generate markdown notebooks from ImageJ Macro☆27Mar 17, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- TrackMate is your buddy for your everyday tracking.☆234Mar 25, 2026Updated 3 weeks ago
- Generate multifunctional and macro recordable GUIs from Python classes☆45Apr 2, 2026Updated 2 weeks ago
- CLIJ is deprecated. Visit CLIJ2☆56Jun 12, 2021Updated 4 years ago
- Cell tracking and segmentation software☆175Updated this week
- Basic example of using OME-Zarr in a Nextflow pipeline☆21Jul 15, 2025Updated 9 months ago
- Graph-based framework to manipulate and analyze cell lineages from cell tracking data☆24Apr 7, 2026Updated last week
- Lectures for a napari training course☆52Aug 30, 2023Updated 2 years ago
- StarDist plugin for ImageJ☆30May 9, 2022Updated 3 years ago
- ☆21Apr 8, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- 1d plotting in napari-based canvas.☆25Apr 8, 2026Updated last week
- A fully scalable robust image feature extraction library.☆28Mar 27, 2026Updated 2 weeks ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆25Nov 21, 2024Updated last year
- [OBSOLETE] A collection of plugins related to the cell/nucleus tracking, motivated by the Cell Tracking Challenge.☆10Jan 11, 2022Updated 4 years ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Apr 9, 2026Updated last week
- ImageJ+ImageJ2 compatibility layer☆17Apr 2, 2026Updated 2 weeks ago
- Multi-Object Tracking with Integer Linear Equations☆39Updated this week