mastodon-sc / mastodon
Mastodon – a large-scale tracking and track-editing framework for large, multi-view images.
☆72Updated last week
Alternatives and similar repositories for mastodon:
Users that are interested in mastodon are comparing it to the libraries listed below
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆36Updated last month
- Browse your OMERO database from within napari.☆36Updated 2 weeks ago
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆18Updated last year
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated 2 months ago
- ☆35Updated this week
- Accelerated Pixel and Object Classifiers (APOC)☆57Updated 2 months ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆50Updated 6 months ago
- ImgLib2/BDV implementation of Stitching for large datasets☆73Updated 2 weeks ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated 4 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆52Updated 5 months ago
- StarDist plugin for ImageJ☆29Updated 2 years ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 2 months ago
- GPU-accelerated image processing for everyone☆52Updated 9 months ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆23Updated 5 months ago
- ImgLib2-based viewer for registered SPIM stacks and more☆40Updated 3 weeks ago
- ☆49Updated 6 months ago
- A platform for compiling, analyzing, and exploring tracking data☆43Updated last month
- An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.☆65Updated 2 weeks ago
- The ImageJ plugin to run deep-learning models☆93Updated last week
- This repository contains the materials for the University of Oxford DTC ONBI Image Analysis course☆18Updated 7 years ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 6 months ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 2 weeks ago
- GPU-accelerated general purpose image processing and image analysis in napari☆35Updated 6 months ago
- ☆23Updated this week
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆16Updated last month
- Create 3D/4D animations using a natural language-based syntax☆59Updated 2 years ago
- Cookiecutter for napari plugins☆69Updated 5 months ago
- A napari plugin for clustering objects according to their properties.☆83Updated this week
- Particle tracking by solving linear assignment problem.☆50Updated 2 weeks ago
- The ImageJ wiki☆27Updated this week