Alternatives and similar repositories for czicompress

Users that are interested in czicompress are comparing it to the libraries listed below

• imaris / ImarisWriter
  ☆38Updated last year
• ZEISS / libczi
  libCZI is an Open Source Cross-Platform C++ library to read and write CZI.
  ☆61Updated 3 weeks ago
• haesleinhuepf / napari-process-points-and-surfaces
  Process and analyze surfaces using vedo in napari.
  ☆25Updated last year
• SebastienTs / MosaicExplorerJ
  An ImageJ script to align and stitch three-dimensional tiles and quickly explore terabyte-sized microscopy datasets
  ☆13Updated 3 years ago
• haesleinhuepf / napari-segment-blobs-and-things-with-membranes
  A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…
  ☆30Updated 7 months ago
• imagej / napari-imagej
  Use ImageJ functionality from napari
  ☆32Updated 3 months ago
• UU-cellbiology / BigTrace
  FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets
  ☆29Updated last month
• yfukai / laptrack
  Particle tracking by solving linear assignment problem.
  ☆61Updated 3 weeks ago
• morphometrics / morphometrics
  ☆22Updated 2 years ago
• zoccoler / napari-flim-phasor-plotter
  ☆12Updated 3 months ago
• multiview-stitcher / multiview-stitcher
  A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.
  ☆99Updated last week
• weigertlab / napari-spotiflow
  Spotiflow plugin for napari
  ☆15Updated 3 months ago
• aelefebv / Mitometer
  Automated mitochondrial segmentation and tracking.
  ☆33Updated 4 years ago
• sebi06 / napari_zeiss
  Use Napari Viewer to display CZI images
  ☆11Updated 3 years ago
• guiwitz / microfilm
  Creating figures and animations for multi-channel images with a focus on microscopy.
  ☆78Updated last year
• saalfeldlab / n5-ij
  ImageJ convenience layer for N5
  ☆19Updated last month
• COBA-NIH / MicroscopyForBeginnersReferenceGuide
  A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation
  ☆29Updated last month
• haesleinhuepf / devbio-napari
  ☆51Updated 7 months ago
• NEUBIAS / training-resources
  Resources for teaching/preparing to teach bioimage analysis
  ☆58Updated last month
• micro-manager / futureMMCore
  Place to discuss the future design of a universal microscope hardware interface
  ☆15Updated 4 years ago
• nvladimus / npy2bdv
  Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.
  ☆34Updated last year
• napari / napari-animation
  A napari plugin for making animations
  ☆89Updated 3 weeks ago
• haesleinhuepf / napari-plot-profile
  ☆20Updated 7 months ago
• guiwitz / napari-convpaint
  Segment images utilizing pre-trained neural networks as feature extractors
  ☆44Updated 2 weeks ago
• haesleinhuepf / the-segmentation-game
  Gamified image segmentation quality estimation
  ☆19Updated 7 months ago
• ome / napari-omero
  Browse your OMERO database from within napari.
  ☆39Updated 3 weeks ago
• lukasz-migas / napari-plot
  1d plotting in napari-based canvas.
  ☆25Updated last week
• micro-manager / pymmcore
  Python bindings for MMCore, Micro-Manager's device control layer
  ☆35Updated 2 weeks ago
• True-North-Intelligent-Algorithms / notebooks-and-napari-widgets-for-dl
  A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.
  ☆18Updated 3 weeks ago
• sebi06 / czitools
  This repository provides a collection of tools to simplify reading CZI (Carl Zeiss Image) pixel and metadata in Python. In addition it al…
  ☆17Updated 2 weeks ago