Alternatives and similar repositories for czicompress

Users that are interested in czicompress are comparing it to the libraries listed below

• imaris / ImarisWriter
  ☆37Updated last year
• ZEISS / libczi
  libCZI is an Open Source Cross-Platform C++ library to read and write CZI.
  ☆52Updated last month
• haesleinhuepf / napari-segment-blobs-and-things-with-membranes
  A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…
  ☆27Updated 2 months ago
• SebastienTs / MosaicExplorerJ
  An ImageJ script to align and stitch three-dimensional tiles and quickly explore terabyte-sized microscopy datasets
  ☆13Updated 3 years ago
• haesleinhuepf / napari-process-points-and-surfaces
  Process and analyze surfaces using vedo in napari.
  ☆24Updated last year
• haesleinhuepf / napari-plot-profile
  ☆19Updated 2 months ago
• multiview-stitcher / multiview-stitcher
  A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.
  ☆75Updated 2 weeks ago
• yfukai / laptrack
  Particle tracking by solving linear assignment problem.
  ☆55Updated this week
• weigertlab / napari-spotiflow
  Spotiflow plugin for napari
  ☆12Updated last month
• neurobiology-ut / PHILOW
  Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets
  ☆26Updated 5 months ago
• zoccoler / napari-flim-phasor-plotter
  ☆11Updated 3 weeks ago
• imagej / napari-imagej
  Use ImageJ functionality from napari
  ☆31Updated 3 months ago
• ekatrukha / BigTrace
  FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets
  ☆30Updated last week
• saalfeldlab / n5-ij
  ImageJ convenience layer for N5
  ☆17Updated last month
• COBA-NIH / MicroscopyForBeginnersReferenceGuide
  A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation
  ☆28Updated last month
• sebi06 / czitools
  This repository provides a collection of tools to simplify reading CZI (Carl Zeiss Image) pixel and metadata in Python. In addition it al…
  ☆14Updated this week
• tlambert03 / pycudadecon
  Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy
  ☆65Updated 2 weeks ago
• weigertlab / napari-trackastra
  napari plugin for trackastra
  ☆15Updated 8 months ago
• aelefebv / Mitometer
  Automated mitochondrial segmentation and tracking.
  ☆32Updated 3 years ago
• tlambert03 / napari-ndtiffs
  A napari plugin to load & deskew folders of lattice light sheet TIFFs
  ☆13Updated 2 weeks ago
• morphometrics / morphometrics
  ☆22Updated last year
• guiwitz / microfilm
  Creating figures and animations for multi-channel images with a focus on microscopy.
  ☆77Updated 7 months ago
• pymmcore-plus / pymmcore-plus
  Pure python/C++ micro-manager ecosystem
  ☆40Updated last week
• sebi06 / napari_zeiss
  Use Napari Viewer to display CZI images
  ☆11Updated 3 years ago
• pyapp-kit / ndv
  Simple, fast-loading, n-dimensional array viewer with minimal dependencies.
  ☆79Updated 2 weeks ago
• tlambert03 / ome-types
  native Python dataclasses for the OME data model
  ☆57Updated 2 weeks ago
• haesleinhuepf / devbio-napari
  ☆51Updated 2 months ago
• COSC-Lab / napari-fast4dreg
  dask empowered fast4dreg
  ☆11Updated 7 months ago
• guiwitz / naparimovie
  Create movies from series of key-frames in napari.
  ☆38Updated 4 years ago
• QI2lab / OPM
  Archived: control, reconstruction, and analysis code for oblique plane microscopy.
  ☆22Updated 3 months ago