ZEISS / czicompressLinks
Reduce the size of existing CZI-documents by converting them to zstd-compressed CZI documents
☆23Updated 2 months ago
Alternatives and similar repositories for czicompress
Users that are interested in czicompress are comparing it to the libraries listed below
Sorting:
- ☆37Updated last year
- Automated mitochondrial segmentation and tracking.☆32Updated 3 years ago
- Process and analyze surfaces using vedo in napari.☆24Updated last year
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆26Updated last month
- An ImageJ script to align and stitch three-dimensional tiles and quickly explore terabyte-sized microscopy datasets☆13Updated 3 years ago
- napari plugin for trackastra☆13Updated 7 months ago
- Use Napari Viewer to display CZI images☆11Updated 3 years ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated this week
- Use ImageJ functionality from napari☆31Updated 2 months ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 3 months ago
- ImageJ convenience layer for N5☆17Updated 3 weeks ago
- ☆20Updated last year
- ☆18Updated last month
- ☆10Updated 2 months ago
- Place to discuss the future design of a universal microscope hardware interface☆15Updated 4 years ago
- Particle tracking by solving linear assignment problem.☆52Updated last week
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated 2 years ago
- 1d plotting in napari-based canvas.☆26Updated this week
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆18Updated last year
- Annotate microscopy images for CNN classifier☆11Updated 3 years ago
- ☆49Updated last month
- An implementation agnostic schema for describing a sequence of events during a multi-dimensional imaging acquisition.☆19Updated last week
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Updated 9 months ago
- A minimalistic napari plugin to create and save regions of interest and annotations on series of images☆16Updated 2 months ago
- Pure python/C++ micro-manager ecosystem☆36Updated this week
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆64Updated this week
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated last month
- StarDist plugin for napari☆38Updated 9 months ago
- dask empowered fast4dreg☆11Updated 6 months ago
- An open-source Python library for the analysis of fluorescence lifetime and hyperspectral images using the phasor approach.☆29Updated this week