Tools for working with single-neuron morphological reconstructions
☆22Apr 16, 2026Updated 5 months ago
Alternatives and similar repositories for neuron_morphology
Users that are interested in neuron_morphology are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Interactive Python course for using the Neurodata Without Borders format☆15May 20, 2019Updated 7 years ago
- A collection of notebooks to provide examples of using Microns-explorer.org datasets☆44May 30, 2024Updated 2 years ago
- Phenotypic variation of transcriptomic cell types in mouse motor cortex☆29Oct 4, 2021Updated 4 years ago
- Shiny app for visualization, exploration of mouse brain single cell gene expression☆12Oct 31, 2018Updated 7 years ago
- Python library to interface with CATMAID servers. Fully interoperable with navis.☆26Aug 8, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Neuronal Morphology Analysis Tool☆109Feb 26, 2025Updated last year
- QC and cell type assignment for patch-seq transcriptomics data☆27May 3, 2024Updated 2 years ago
- BlueBrain's recipe writer to parameterize structure and logic of a mouse whole-neocortex connectome☆10May 13, 2022Updated 4 years ago
- A python and C++ library for reading and writing neuronal morphologies☆28Feb 26, 2025Updated last year
- Needed for NEURON GUI☆12Sep 7, 2026Updated last week
- Code to the paper "Self-Supervised Graph Representation Learning for Neuronal Morphologies"☆18Apr 5, 2024Updated 2 years ago
- This repo allows for the complete reproduction, from processed data, of all the main and supplemental figures in the manuscript Non-linea…☆25Dec 5, 2025Updated 9 months ago
- ☆18May 26, 2023Updated 3 years ago
- Optimization of single-cell biophysically detailed models☆16Jul 17, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Courseware for CS1 courses that incorporate LLMs☆16Mar 29, 2024Updated 2 years ago
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Nov 26, 2020Updated 5 years ago
- Analysis pipeline for the adolescent mouse nervous system project☆25Jun 5, 2026Updated 3 months ago
- Code for projecting volumetric nifti files to HCP surface and Glasser atlas parcel-wise value extraction☆12May 21, 2023Updated 3 years ago
- GUI to compute and explore receptive fields, primarily from calcium imaging recordings☆13Jun 26, 2021Updated 5 years ago
- computes intrinsic cell features from intracellular electrophysiology data☆31Aug 14, 2026Updated last month
- Legacy project superseded by https://github.com/morphonets/SNT☆13Jul 19, 2021Updated 5 years ago
- The is a repository containing MATLAB and Python code used in teaching graduate students in neuroscience.☆14Jan 20, 2022Updated 4 years ago
- manually align specimens to annotated 3D spaces☆21May 10, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Tools, algorithms, and frameworks for managing and analyzing neural data.☆21Mar 21, 2022Updated 4 years ago
- The Blue Brain Pythonic Simulation and Network Analysis Productivity layer☆21Feb 26, 2025Updated last year
- A unified framework for skeletonization, morphological analysis, and connectivity analysis.☆44Aug 23, 2024Updated 2 years ago
- This repository contains code to generate standardized cell type nomenclature from an R "dendrogram".☆13Apr 25, 2022Updated 4 years ago
- An assortment of graphics utilities☆13Jul 22, 2021Updated 5 years ago
- ☆43Sep 1, 2025Updated last year
- ☆17Sep 20, 2021Updated 5 years ago
- Software demonstrations for a course on Topological Data Analysis.☆12Mar 26, 2021Updated 5 years ago
- Lectures for a napari training course☆52Aug 30, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Generate a matrix of predictors corresponding to different behavioral variables and process a regression-based encoding model to obtain t…☆18Jul 14, 2019Updated 7 years ago
- ☆12Nov 17, 2018Updated 7 years ago
- Patterns 2021☆15Aug 13, 2026Updated last month
- Simple syntax highlighting for spice☆11Mar 23, 2019Updated 7 years ago
- The framework for quantification of neuronal anatomy☆61Updated this week
- A python package for the topological analysis of neurons.☆29Feb 26, 2025Updated last year
- A Primer on Motion Capture with Deep Learning:Principles, Pitfalls and Perspectives☆22Sep 11, 2021Updated 5 years ago