sofroniewn / tutorial-scipy2021-bioimage-analysis-fundamentals
Tutorial for SciPy 2021 Bioimage Analysis Fundamentals in Python
☆30Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for tutorial-scipy2021-bioimage-analysis-fundamentals
- Lectures for a napari training course☆50Updated last year
- Course material for fundamentals in digital image processing☆20Updated 5 years ago
- ☆17Updated 2 years ago
- website for the napari image viewer☆44Updated this week
- Course material for Data Analysis and Visualization with Python☆20Updated 2 months ago
- Process images using SimpleITK in napari☆19Updated last month
- Training resources for Students at Uni Leipzig who want to dive into bio-image data science with Python. The material will develop betwee…☆37Updated 4 months ago
- Efficient cell detection in large images using cellfinder in napari☆24Updated 10 months ago
- The repository of NEUBIAS textbook 2021☆10Updated 2 years ago
- Linking napari layers with Matplotlib plots☆39Updated this week
- Creating figures and animations for multi-channel images with a focus on microscopy.☆66Updated 2 years ago
- Discover, install, and share napari plugins☆51Updated 2 months ago
- Robust and unbiased estimation of the background distribution for fluorescence microscopy.☆12Updated 4 months ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Updated 3 months ago
- ☆12Updated 3 years ago
- StarDist plugin for napari☆36Updated 2 months ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆47Updated last month
- ☆20Updated last year
- Quickly find the affine matrix mapping one image to another using manual correspondence points annotation☆18Updated 4 months ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆14Updated 2 months ago
- A platform for compiling, analyzing, and exploring tracking data☆42Updated 3 weeks ago
- Generate markdown notebooks from ImageJ Macro☆23Updated 3 years ago
- ☆19Updated last year
- Track and lineage visualization with btrack and Napari☆45Updated 3 weeks ago
- Get Your Brain Together Neuroimage Registration Workshops and Hackathons☆20Updated last week
- ilastik plugin for napari☆13Updated 7 months ago
- ☆20Updated last month
- Online documentation and reference for CLIJ☆28Updated 3 years ago
- ☆16Updated 2 years ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆20Updated this week