lowe-lab-ucl / cellx-predictLinks
Explainable AI model of cell behavior
☆20Updated 2 years ago
Alternatives and similar repositories for cellx-predict
Users that are interested in cellx-predict are comparing it to the libraries listed below
Sorting:
- Transformer-based cell tracking for live-cell microscopy☆81Updated last week
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 5 months ago
- Utils and convenience functions for large-scale bio-image analysis.☆57Updated last week
- Multi-Object Tracker using Integer Linear Equations☆37Updated last month
- A library to facilitate machine learning on multi-dimensional images.☆85Updated last week
- Optimize image processing workflows in napari☆18Updated 3 months ago
- Tools for handling FIB-SEM data and annotations☆22Updated 4 months ago
- scalable multiscale image pyramids in python☆28Updated last year
- Utilities for computing common accuracy metrics on cell tracking solutions with ground truth☆35Updated last week
- ☆22Updated last year
- Track and lineage visualization with btrack and Napari☆45Updated 9 months ago
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆39Updated last week
- Affinity based segmentation algorithms and tools☆10Updated 2 months ago
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆166Updated 2 months ago
- 🌈☆59Updated 4 months ago
- GPU-accelerated general purpose image processing and image analysis in napari☆35Updated 3 months ago
- Cell tracking and segmentation software☆127Updated last week
- Lazily load multiscale whole-slide images with openslide and dask☆33Updated 2 years ago
- Gamified image segmentation quality estimation☆17Updated 3 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆55Updated 9 months ago
- A napari plugin for clustering objects according to their properties.☆87Updated 2 weeks ago
- Discover, install, and share napari plugins☆52Updated last month
- Python image segmentation plugin☆31Updated 4 years ago
- simple package for augmentation of n-dimensional arrays☆34Updated 2 years ago
- Jupyter notebooks for deep lineage analysis of single-cell heterogeneity and cell cycling duration heritability.☆30Updated 4 years ago
- StarDist plugin for napari☆40Updated 11 months ago
- Particle tracking by solving linear assignment problem.☆57Updated last week
- MorphoFeatures code and data☆21Updated 2 years ago
- 3D shape analysis using deep learning☆25Updated last year
- Python module for registering and fusing multi-view microscopy data☆23Updated 5 months ago