lowe-lab-ucl / cellx-predict
Explainable AI model of cell behavior
☆20Updated 2 years ago
Alternatives and similar repositories for cellx-predict:
Users that are interested in cellx-predict are comparing it to the libraries listed below
- Process images using SimpleITK in napari☆21Updated last week
- Track and lineage visualization with btrack and Napari☆45Updated 6 months ago
- ☆20Updated last year
- A 3D interactivity toolbox for napari☆34Updated 2 weeks ago
- ☆16Updated 2 years ago
- Python module for registering and fusing multi-view microscopy data☆23Updated 2 months ago
- scalable multiscale image pyramids in python☆27Updated 9 months ago
- Optimize image processing workflows in napari☆17Updated last week
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆35Updated this week
- Tools for handling FIB-SEM data and annotations☆21Updated last month
- GPU-accelerated general purpose image processing and image analysis in napari☆35Updated last week
- ☆31Updated 2 years ago
- ☆12Updated 8 months ago
- Gamified image segmentation quality estimation☆17Updated last week
- Self-supervised models for encoding protein localization patterns from microscopy images☆76Updated 7 months ago
- Discover, install, and share napari plugins☆51Updated last month
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆42Updated 2 months ago
- ☆23Updated last year
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated last month
- A self-supervised denoising algorithm.☆25Updated last year
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆22Updated last month
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Updated 8 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆52Updated 6 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆57Updated 2 months ago
- Resources for teaching/preparing to teach bioimage analysis☆56Updated last week
- A napari plugin for zarr backed OME-NGFF images☆33Updated this week
- ☆23Updated 3 weeks ago
- python tools for BigDataViewer☆22Updated 4 months ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆43Updated last week
- simple package for augmentation of n-dimensional arrays☆32Updated last year