guiwitz / neubias_academy_biapyLinks
NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter
☆63Updated 2 years ago
Alternatives and similar repositories for neubias_academy_biapy
Users that are interested in neubias_academy_biapy are comparing it to the libraries listed below
Sorting:
- Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecu…☆230Updated 2 years ago
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆135Updated 5 years ago
- Lectures for a napari training course☆51Updated 2 years ago
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆98Updated 2 years ago
- A platform for compiling, analyzing, and exploring tracking data☆47Updated 2 months ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆151Updated last month
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆39Updated 2 weeks ago
- An introduction to bioimage analysis - http://bioimagebook.github.io☆74Updated 3 months ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆52Updated 6 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated this week
- A napari plugin for clustering objects according to their properties.☆88Updated this week
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆82Updated this week
- ☆51Updated 6 months ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- Generate markdown notebooks from ImageJ Macro☆26Updated 4 years ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆60Updated last year
- Imagej toolset to ease hyperstacks visualization and handling☆23Updated last year
- Track and lineage visualization with btrack and Napari☆46Updated last month
- Materials for a Python Beginner's Course. First given at the Royal Society of Biology. Designed and delivered by Chas Nelson and Mikolaj …☆44Updated 2 years ago
- Resources for teaching/preparing to teach bioimage analysis☆58Updated this week
- Training resources for Students at Uni Leipzig who want to dive into bio-image data science with Python. The material will develop betwee…☆39Updated last year
- Z-stack Depth Colorcode ImageJ FIJI plugin☆25Updated last week
- StarDist plugin for napari☆39Updated last year
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 4 years ago
- The repository of NEUBIAS textbook 2021☆11Updated 3 years ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated last year
- StarDist plugin for ImageJ☆30Updated 3 years ago
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆88Updated last week
- ☆16Updated last year
- Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools a…☆156Updated 3 weeks ago