haesleinhuepf / devbio-napari
☆46Updated 3 months ago
Alternatives and similar repositories for devbio-napari:
Users that are interested in devbio-napari are comparing it to the libraries listed below
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆26Updated 2 months ago
- Browse your OMERO database from within napari.☆35Updated last week
- StarDist plugin for napari☆37Updated 5 months ago
- ☆15Updated 2 years ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated 4 months ago
- A napari plugin for clustering objects according to their properties.☆82Updated last week
- Lectures for a napari training course☆50Updated last year
- A module with convenience functions for writing Python code that interacts with OMERO.☆41Updated 3 months ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆25Updated 8 months ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆28Updated 2 weeks ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆12Updated this week
- Imagej toolset to ease hyperstacks visualization and handling☆22Updated 4 months ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆50Updated 4 months ago
- Multiple file format reading directly into napari using pure Python☆35Updated 6 months ago
- Segment images by pixel classification based on pre-trained convolutional layer feature extraction☆28Updated 3 weeks ago
- Process and analyze surfaces using vedo in napari.☆24Updated 9 months ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated last month
- ☆22Updated 5 months ago
- ☆12Updated 9 months ago
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Updated last year
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 2 weeks ago
- A minimal dependency napari plugin giving access to scikit-image functions☆17Updated 5 months ago
- Denoising via adaptive binning.☆12Updated 7 months ago
- Visualizing feature measurements on label images in napari☆10Updated 6 months ago
- Interactive visualization and sharing of cell tracking data in the browser☆21Updated last week
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆18Updated last year
- Particle tracking by solving linear assignment problem.☆49Updated this week
- ☆17Updated 2 years ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆71Updated this week
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 2 months ago