Online documentation and reference for CLIJ
☆28May 21, 2021Updated 4 years ago
Alternatives and similar repositories for clij-docs
Users that are interested in clij-docs are comparing it to the libraries listed below
Sorting:
- ☆13Mar 10, 2020Updated 5 years ago
- ☆20Updated this week
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆17Jul 7, 2025Updated 7 months ago
- PSFj - Know your microscope fluorescence☆24Mar 6, 2020Updated 5 years ago
- Lattice light-sheet post-processing utility.☆30Feb 2, 2026Updated 3 weeks ago
- Fiji macro for cutting confocal stacks at various depths relative to surface signal☆10Sep 28, 2020Updated 5 years ago
- A JupyterBook site for napari workshop materials☆10Jul 11, 2022Updated 3 years ago
- Prototype implementation of napari-integrated CNN training viewer☆14Dec 27, 2024Updated last year
- CLIJ is deprecated. Visit CLIJ2☆56Jun 12, 2021Updated 4 years ago
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Aug 13, 2021Updated 4 years ago
- ☆14Jan 26, 2021Updated 5 years ago
- Introduction to Python Programming☆11Mar 31, 2020Updated 5 years ago
- clEsperanto - GPU-accelerated image processing across languages and platforms☆11Feb 13, 2021Updated 5 years ago
- ☆14Jan 25, 2024Updated 2 years ago
- ☆13Apr 27, 2020Updated 5 years ago
- ☆24Sep 13, 2025Updated 5 months ago
- Microsopic Image Analyzer (MIA)☆28Aug 19, 2025Updated 6 months ago
- Python package for optical flow estimation☆15Dec 25, 2022Updated 3 years ago
- Accelerated Pixel and Object Classifiers (APOC)☆60Jul 18, 2025Updated 7 months ago
- a free, open-source web app for annotating, training, and evaluating image understanding algorithms☆25Nov 23, 2021Updated 4 years ago
- ImageJ convenience layer for N5☆19Updated this week
- ilastik plugin for napari☆14Dec 15, 2025Updated 2 months ago
- Create 3D/4D animations using a natural language-based syntax☆61Jun 6, 2025Updated 8 months ago
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Jan 5, 2026Updated last month
- An Ilastik-like interactive pixel classifier.☆16Sep 5, 2024Updated last year
- A plugin to read whole slide images within napari.☆21Nov 24, 2025Updated 3 months ago
- 3-D imaging visualisation through slicing☆31Jan 14, 2025Updated last year
- The Java library to run Deep Learning models☆33Nov 10, 2025Updated 3 months ago
- A writer and reader for NGFF OME-Zarr datasets☆14Nov 2, 2021Updated 4 years ago
- GPU-accelerated image processing in QuPath☆16Oct 23, 2021Updated 4 years ago
- Track and lineage visualization with btrack and Napari☆45Sep 29, 2025Updated 5 months ago
- Lectures for a napari training course☆52Aug 30, 2023Updated 2 years ago
- scalable multiscale image pyramids in python☆29Jul 25, 2024Updated last year
- Code for the paper: Image Denoising and the Generative Accumulation of Photons☆22Aug 2, 2023Updated 2 years ago
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆14Feb 4, 2026Updated 3 weeks ago
- Online service for finding dendritic spines in microscope slide images☆11Oct 11, 2023Updated 2 years ago
- ☆112Feb 19, 2026Updated last week
- Get Your Brain Together Neuroimage Registration Workshops and Hackathons☆21Nov 14, 2024Updated last year
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Apr 1, 2025Updated 11 months ago