bioinfo-chru-strasbourg / vcf2circos
python plotly Circos from VCF
☆31Updated 6 months ago
Alternatives and similar repositories for vcf2circos:
Users that are interested in vcf2circos are comparing it to the libraries listed below
- A Nextflow workflow to generate lift over files for any pair of genomes☆56Updated last month
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆70Updated last month
- ☆74Updated 3 months ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 3 years ago
- Error correction of ONT transcript reads☆58Updated last year
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- perSVade: personalized Structural Variation detection☆38Updated last month
- Filter SAM file for soft and hard clipped alignments☆46Updated 7 months ago
- Predict 5mC in PacBio HiFi reads☆36Updated this week
- ☆61Updated last week
- Simple pileup-based variant caller☆85Updated 9 months ago
- ☆79Updated 8 months ago
- Set of tools to manipulate and visualize modified base bam files☆49Updated 2 years ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆42Updated 2 months ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated 10 months ago
- Structural variant caller☆54Updated 3 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆46Updated 4 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆57Updated 3 months ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆48Updated 3 months ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆29Updated 3 months ago
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆40Updated last week
- Compute N50/NG50 and auN/auNG☆31Updated last year
- Identify and annotate TE-mediated insertions in long-read sequence data☆41Updated last year
- De novo annotation of young retrotransposons☆46Updated 2 years ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆38Updated last year
- catalog for long-read sequencing tools☆32Updated last year
- ☆22Updated 3 years ago