WGLab / SeqMuleLinks
Automated human exome/genome variants detection from FASTQ files
☆22Updated 3 years ago
Alternatives and similar repositories for SeqMule
Users that are interested in SeqMule are comparing it to the libraries listed below
Sorting:
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 4 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆23Updated 5 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 4 months ago
- ☆24Updated 11 months ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- Filters for false-positive mutation calls in NGS☆30Updated 6 years ago
- MSKCC Reis-Filho Lab pipeline thingy☆17Updated 2 months ago
- A program for summarising CpG methylation patterns☆20Updated 8 years ago
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Updated 5 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆38Updated 4 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆29Updated last year
- An awk-like VCF parser☆56Updated last year
- Tools to process LIANTI sequence data☆23Updated 6 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- CAVA (Clinical Annotation of VAriants)☆14Updated 6 years ago
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆40Updated 6 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆19Updated 4 years ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago