MGI-tech-bioinformatics / DNBelab_C_Series_HT_scRNA-analysis-software
An open source and flexible pipeline to analysis high-throughput DNBelab C Series single-cell RNA datasets
☆90Updated last week
Alternatives and similar repositories for DNBelab_C_Series_HT_scRNA-analysis-software:
Users that are interested in DNBelab_C_Series_HT_scRNA-analysis-software are comparing it to the libraries listed below
- Analysis pipeline for ATAC-seq data☆58Updated last year
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆103Updated 3 weeks ago
- Publication Page for Satpathy*, Granja* et al 2019☆94Updated 4 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆100Updated last year
- Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease☆93Updated 3 years ago
- collected resource for scRNA-seq analysis☆59Updated last year
- SNV calling from single cell sequencing☆96Updated 5 months ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆74Updated 5 years ago
- Analysis pipeline for ATAC-seq Data☆60Updated 3 years ago
- SCSA: cell type annotation for single-cell RNA-seq data☆90Updated 2 years ago
- ☆105Updated last year
- ☆105Updated last month
- The integration of single cell rank-based gene set enrichment analysis☆122Updated 9 months ago
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆55Updated last year
- Analysis of Paired-Tag datasets☆39Updated last year
- This repository contains the code used to generate figures and perform analysis for the manuscript titled "Transcriptomic and Spatial Pro…☆75Updated 6 months ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆138Updated 3 weeks ago
- Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinoma☆77Updated 5 months ago
- A tool for semi-automatic cell type harmonization and integration☆102Updated last month
- ☆79Updated last year
- wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq☆55Updated 3 weeks ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆79Updated last year
- Reanalyze of GSE111527 scRNA-seq data☆19Updated 4 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆92Updated 2 years ago
- Detect doublets in single-cell RNA-seq data☆38Updated 5 years ago
- A tool for detecting somatic variants in single cell data☆198Updated 7 months ago
- ☆61Updated last year
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆94Updated last year
- Multi-omics analysis protocols by Lyu.☆51Updated last year
- Basic workflow for ATAC-seq analysis☆77Updated last year