Alternatives and similar repositories for explicit

Users that are interested in explicit are comparing it to the libraries listed below

• guigolab / bamstats
  A command line tool to compute mapping statistics from a BAM file
  ☆25Updated 3 years ago
• akiomiyao / tif
  Transposon Insertion Finder - Detection of new TE insertions in NGS data
  ☆20Updated 8 months ago
• YaoLab-Bioinfo / LIRBase
  A comprehensive collection of long inverted repeats in 424 eukaryotic genomes
  ☆16Updated 4 years ago
• YaoLab-Bioinfo / intansv
  Integrative analysis of structural variations.
  ☆40Updated 2 years ago
• jameslz / fastx-utils
  fastx-utils using klib
  ☆20Updated 5 years ago
• GuangchuangYu / plotTree-ggtree
  ggtree version of plotTree.R
  ☆18Updated 7 years ago
• esctrionsit / snphub
  A Shiny-based server framework for retrieving, analyzing and visualizing the large genomic variations data in a lab.
  ☆19Updated last year
• drostlab / myTAI
  Evolutionary Transcriptomics with R
  ☆47Updated this week
• czc / nb_distribution
  novoBreak: local assembly for breakpoint detection in cancer genomes
  ☆25Updated 7 years ago
• EI-CoreBioinformatics / portcullis
  Splice junction analysis and filtering from BAM files
  ☆42Updated 3 years ago
• YuLab-SMU / MicrobiomeProfiler
  A shiny package for microbiome functional enrichment analysis
  ☆38Updated last month
• camoragaq / BrumiR
  BrumiR: A toolkit for de novo discovery of microRNAs from sRNA-seq data.
  ☆12Updated 3 years ago
• janepipistrelle / bacterial_GWAS_tutorial
  Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop
  ☆18Updated 9 years ago
• nf-core / lncpipe
  UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets
  ☆34Updated 10 months ago
• sguizard / DensityMap
  DensityMap is perl tool for the visualization of features density along chromosomes
  ☆18Updated 3 years ago
• PacificBiosciences / bam2fastx
  Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.
  ☆39Updated 2 years ago
• BIMSBbioinfo / pigx_rnaseq
  Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline
  ☆21Updated last week
• hsinnan75 / MapCaller
  MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes
  ☆30Updated 5 years ago
• YuLab-SMU / seqcombo
  Visualization tool for genetic reassortment
  ☆21Updated 3 months ago
• xia-lab / Seq2Fun
  ☆17Updated 7 months ago
• xmao / kobas
  KOBAS: a command line tool for identifying significant pathways from genomic data
  ☆32Updated 15 years ago
• ProwlerForNanopore / ProwlerTrimmer
  Trimming tool for Oxford Nanopore sequence data
  ☆22Updated 4 years ago
• hillerlab / CESAR2.0
  ☆28Updated 3 years ago
• yuhanH / HPViewer
  ☆15Updated 7 years ago
• mattheiter / openPrimeR
  An R Package for Multiplex PCR Primer Design and Analysis
  ☆29Updated 6 months ago
• Transipedia / dekupl
  Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.
  ☆15Updated 7 years ago
• YuLab-SMU / plotting-tree-with-data-using-ggtreeExtra
  ☆26Updated 4 years ago
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated 10 months ago
• JhuangLab / iseq
  An integrated analysis toolkit and pipeline for Next-Generation Sequencing (NGS) panel sequencing data
  ☆14Updated 7 years ago
• FredHutch / microbial-rnaseq
  Analysis of RNAseq data from (host-associated) microbial mixtures
  ☆12Updated 6 years ago