Alternatives and similar repositories for DRAGEN_Analysis

Users that are interested in DRAGEN_Analysis are comparing it to the libraries listed below

• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆65Updated 2 months ago
• kensung-lab / INSurVeyor
  An insertion caller for Illumina paired-end WGS data.
  ☆23Updated 10 months ago
• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆42Updated last year
• rsemeraro / PyPore
  A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data
  ☆20Updated 2 years ago
• tobiasrausch / vc
  A tutorial on structural variant calling for short read sequencing data
  ☆38Updated 7 months ago
• HKU-BAL / Clair3-RNA
  Clair3-RNA - a long-read small variant caller for RNA sequencing data
  ☆23Updated last month
• OliveiraDS-hub / ChimeraTE
  A pipeline to detect chimeric transcripts derived from genes and transposable elements.
  ☆29Updated 3 weeks ago
• WGLab / LongReadSum
  ☆20Updated 2 months ago
• ksahlin / isONcorrect
  Error correction of ONT transcript reads
  ☆58Updated last year
• WGLab / LIQA
  Long-read Isoform Quantification and Analysis
  ☆39Updated 2 months ago
• chizksh / digenome-toolkit2
  Digenome-toolkit ver2.
  ☆16Updated 3 years ago
• WGLab / DeepRepeat
  An accurate repeat detection from Nanopore data using deep learning and image techniques
  ☆22Updated 2 years ago
• deepomicslab / SpecHLA
  SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …
  ☆44Updated 2 months ago
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• biocorecrg / MOP2
  Master of Pores 2
  ☆23Updated 6 months ago
• josiegleeson / BamSlam
  Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files
  ☆14Updated last year
• nf-core / isoseq
  Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …
  ☆41Updated last month
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆39Updated 3 months ago
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated last month
• timplab / nanopore-methylation-utilities
  ☆29Updated 4 years ago
• nanoporetech / pipeline-umi-amplicon
  Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers
  ☆33Updated last year
• koszullab / hicstuff
  Simple library/pipeline to generate and handle Hi-C data.
  ☆37Updated 6 months ago
• PacificBiosciences / HiFiCNV
  Copy number variant caller and depth visualization utility for PacBio HiFi reads
  ☆42Updated 7 months ago
• LappalainenLab / lorals
  ☆36Updated 2 years ago
• ucdavis-bioinformatics / proc10xG
  processing 10x genomics reads
  ☆26Updated 5 years ago
• YingZhou001 / Immuannot
  Immuological gene typing and annotation for genome assembly
  ☆37Updated 2 months ago
• aakechin / cutPrimers
  curPrimers is a tool for trimming primer sequences from amplicon based NGS reads
  ☆16Updated last week
• multiz / multiz
  DNA multiple sequence aligner, official version from Penn State's Miller Lab
  ☆33Updated 6 years ago
• fritzsedlazeck / parliament2
  Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
  ☆47Updated 5 years ago
• kage-genotyper / kage
  Alignment-free genotyper for SNPs and short indels, implemented in Python.
  ☆49Updated 2 months ago