Build phylogenomic datasets in seconds
☆15Sep 23, 2026Updated 3 weeks ago
Alternatives and similar repositories for kamino
Users that are interested in kamino are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated 2 years ago
- All The Bacteria CLI — query 3.2M bacterial genomes (AMR, MLST, assemblies, metadata) from the terminal☆37Sep 2, 2026Updated last month
- ☆20Sep 16, 2026Updated last month
- Ultrafast identification of signature sequences in microbial genomes☆21Oct 9, 2026Updated last week
- Iterative Gene clUster Analysis, a high-throughput method for gene cluster family identification.☆25Aug 19, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆29Feb 6, 2023Updated 3 years ago
- TAXnomic Profile Aggregation and STAndardisation☆43May 2, 2026Updated 5 months ago
- Shared k-mer content between two genomes☆19Jun 21, 2023Updated 3 years ago
- Methods to determine sequence element (unitig) presence/absence☆28Mar 6, 2026Updated 7 months ago
- A pipeline for bioinformatics analysis of bacterial genomes☆33Oct 5, 2026Updated last week
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Apr 29, 2021Updated 5 years ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆48Sep 18, 2026Updated last month
- In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data☆26May 8, 2024Updated 2 years ago
- Fast sequence distance estimates☆34Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Visualize microbial evolution at the SNP level!☆18Aug 12, 2025Updated last year
- Needleman-Wunsch Alignment in Go☆12Nov 9, 2020Updated 5 years ago
- Rapidly extract reads from FASTX files based on taxonomic classification via Kraken2.☆15Jun 17, 2026Updated 4 months ago
- A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineere…☆21Sep 16, 2026Updated last month
- A high-performance in-silico PCR tool for primer matching and product extraction from FASTA and GenBank sequences.☆19Feb 25, 2026Updated 7 months ago
- Fast and space-efficient taxonomic classification of long reads☆46Jul 16, 2026Updated 3 months ago
- Ultra-rapid detection of viral variants directly from sequencing data☆48Sep 16, 2026Updated last month
- Pipeline to generate NGS reads from a phylogeny☆40Sep 13, 2022Updated 4 years ago
- The Nifty GNU Sequence Library☆11May 28, 2013Updated 13 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Python library for identification and masking of low-complexity regions in nucleotide sequences☆15Updated this week
- Space-efficient pseudoalignment with a colored de Bruijn graph☆58Mar 13, 2025Updated last year
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆34Aug 26, 2024Updated 2 years ago
- ☆14Jun 14, 2026Updated 4 months ago
- Homebrew repository for CloudBioLinux: incubator for formulas to end up in homebrew-science☆19Oct 17, 2016Updated 10 years ago
- CLI tool for querying the Genome Taxonomy Database (GTDB). Batch search, genome cards, taxon lineages, and cross-release taxonomic compar…☆33Sep 18, 2026Updated last month
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Jan 18, 2019Updated 7 years ago
- Pipeline for Evaluating Prokaryotic References☆11Sep 16, 2016Updated 10 years ago
- k-mer-based non-Bayesian Taxonomic Classifier☆21May 28, 2026Updated 4 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- How many distinct k-mers are there in a sequence?☆11Feb 4, 2026Updated 8 months ago
- Automated optimisation of de-novo transcriptome assembly☆25Nov 11, 2015Updated 10 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Aug 23, 2019Updated 7 years ago
- Tearing through FASTA/Q sequences☆41Jul 9, 2026Updated 3 months ago
- Bacterial Annotation by Learned Representation of Genes☆61Mar 26, 2026Updated 6 months ago
- ☆23Sep 22, 2026Updated 3 weeks ago
- Viroid-like circRNA discovery and analysis suite☆20Nov 11, 2023Updated 2 years ago