bioinformatics-core-shared-training / CRUK_CI_RNAseq_courseLinks
Base CRUK Cambridge Institute RNAseq Course
☆21Updated 6 years ago
Alternatives and similar repositories for CRUK_CI_RNAseq_course
Users that are interested in CRUK_CI_RNAseq_course are comparing it to the libraries listed below
Sorting:
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆79Updated 7 months ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 7 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆71Updated 9 months ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- Tutorial for AMSI BioInfoSummer 2018☆30Updated 6 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆80Updated 3 years ago
- Integrative pathway enrichment analysis of multivariate omics data☆115Updated 3 months ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆54Updated 4 years ago
- ATAC-seq snakemake pipeline☆88Updated 5 years ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- Repo for Physalia course Analysis of Single Cell RNA-Seq data☆32Updated 5 years ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 7 years ago
- ☆62Updated 5 years ago
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆58Updated 2 years ago
- GLASS consortium☆42Updated 5 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆103Updated 2 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆44Updated last year
- Immunology-related bioinformatics data and tools☆75Updated last year
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- ☆47Updated 9 months ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆60Updated last month
- R package of colors for the Buenrostro Lab☆84Updated last year
- ☆33Updated 7 years ago
- epigenome analysis to rank transcription factors☆31Updated 2 years ago
- Links to ATAC-seq analysis tools☆71Updated 4 years ago
- The following code accompanies a manuscript combining single-cell RNA-sequencing and genotyping to analyze cellular hierarchies in acute …☆41Updated 5 years ago