shahpr / RiboViz
Analysis and Visualization of Ribosome Profiling Data
☆12Updated 5 years ago
Alternatives and similar repositories for RiboViz:
Users that are interested in RiboViz are comparing it to the libraries listed below
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆22Updated 6 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated last year
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 2 years ago
- PARE: a computational method to Predict Active Regulatory Elements☆10Updated 5 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 3 weeks ago
- RNA-seq workflow: differential transcript usage☆21Updated last year
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated last year
- Genomic Association Tester☆31Updated last year
- Summer school course materials collection☆25Updated 6 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- Tools for visualizing genomics data☆67Updated 3 years ago
- Make rapid visualizations of RNA-seq data in R☆19Updated 5 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆20Updated 7 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆28Updated last month
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- HOT regions paper☆11Updated 5 years ago
- Code for differential splicing comparison paper (Soneson, Matthes, et al.)☆20Updated 8 years ago
- Response to blog post about Salmon☆37Updated 7 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 7 years ago
- a set of NGS pipelines☆24Updated last week
- Software Package for Transcription Factor Binding Site (TFBS) Analysis☆28Updated last month
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆70Updated last year
- Evolutionary Transcriptomics with R☆42Updated 2 weeks ago
- Personal diploid genome creation and coordinate conversion☆24Updated 2 weeks ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago