Danko-Lab / tutorialsLinks
Tutorials covering various topics in genomic data analysis.
☆17Updated 6 years ago
Alternatives and similar repositories for tutorials
Users that are interested in tutorials are comparing it to the libraries listed below
Sorting:
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- a set of NGS pipelines☆24Updated this week
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- processes GoT amplicon data and generates a table of metrics☆30Updated 3 years ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆17Updated 3 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Updated 6 years ago
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- Merge fastq files split over lanes☆20Updated 7 years ago
- Genomic Association Tester☆31Updated 2 years ago
- ATAC-seq lab for BIOINF545☆25Updated 4 months ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆33Updated 3 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 7 years ago
- A small R package to make sequencing read coverage plots in R.☆38Updated 2 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆42Updated last year
- ☆34Updated 6 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- RNA-seq workflow: differential transcript usage☆21Updated last year
- ☆13Updated 7 years ago
- simplified cellranger for long-read data☆19Updated 2 months ago
- Differential ATAC-seq toolkit☆27Updated last year
- Tutorial for AMSI BioInfoSummer 2018☆29Updated 6 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago